RNA id: AMCG00017739


Basic Information

Item Value
RNA id AMCG00017739
length 597
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00017739
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20595312 ~ 20601401 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGTCGTCACTGTGACAGGGCTGTGCGcgcagtgtgtccagtgtgtccattgtgtccagtgtgtccattgtgtccagtgtgtccagtgtgggcAATGGCTGTGCGCTGATGCTTGAGCTTTTCTGTTGGTTTCATTGtgctcacacacccacaccacaCTGAGTAACAGTGCCTGTGCCAACTCCGCGTCTCCAGCCGCGGCAGCTCAGTTTCCGCCGGGCGCGCAGGAAGTCCAGTGTCATTGCTCTGAAGACATGGCTGCAGGCGTGCAGGTTAAGATTGGGATTATCGGAGGGTCTGGTCTTGATGATCCGGATATCTTGGAGGGAAGGAGTGagaagtatgtggacaccccatATGGAAAGcctTCAGATGCCCTCATAGTGGGGAAGATAAAAAATGTGGATTGTGTACTCCTTGCAAGGCATGGCAGGCAGCACACGATTATGCCAACAAATGTCAACTACCAAGCGAACATCTGGGCACTGAAGGAGGAGGGCTGCACCCACCTGGTGGTAACCACAGCGTGCGGCTCGCTTAGAGAGGAGATCCAGCCAGGAGACATCGTCATTATTGACCAGTTCATTGATCGGTAG

Function

GO:

id name namespace
GO:0019509 L-methionine salvage from methylthioadenosine biological_process
GO:0006166 purine ribonucleoside salvage biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017061 S-methyl-5-thioadenosine phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00772 mtaP, MTAP; 5'-methylthioadenosine phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115649 lncRNA downstream 179700 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 236687 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 277881 20302000 ~ 20317431 (-) True AMCG00017725
TU115611 lncRNA downstream 675160 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 727676 19867418 ~ 19867636 (-) True G92660
TU115749 lncRNA upstream 22742 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 33271 20634672 ~ 20634880 (-) True G92800
TU115776 lncRNA upstream 70664 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 75258 20676659 ~ 20734422 (-) True G92823
TU115794 lncRNA upstream 216274 20817675 ~ 20822960 (-) True G92836
AMCG00017735 mRNA downstream 10351 20571457 ~ 20584961 (-) True AMCG00017735
AMCG00017738 mRNA downstream 23902 20553667 ~ 20571410 (-) True AMCG00017738
AMCG00017734 mRNA downstream 44476 20520218 ~ 20550836 (-) True AMCG00017734
AMCG00017736 mRNA downstream 80647 20498267 ~ 20514665 (-) True AMCG00017736
AMCG00017729 mRNA downstream 112560 20458215 ~ 20482752 (-) True AMCG00017729
AMCG00017733 mRNA upstream 1954 20603355 ~ 20616229 (-) True AMCG00017733
AMCG00017741 mRNA upstream 19005 20620406 ~ 20622105 (-) True AMCG00017741
AMCG00017737 mRNA upstream 24683 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017749 mRNA upstream 51744 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017748 mRNA upstream 88820 20690221 ~ 20741395 (-) True AMCG00017748
TU115494 other downstream 1175956 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1175956 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2132136 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3120973 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4564407 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2716725 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2716725 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2716725 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5411260 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5411260 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile