RNA id: AMCG00017741


Basic Information

Item Value
RNA id AMCG00017741
length 1584
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00017741
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20620406 ~ 20622105 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAACTCAGGATGCGCAAAAAGGTTTCACCCGAGGAAGGCAAGGTCTCCCAGACTGTCTCTGCAGAAGCCTCTCCCGATTCCAAATGCCCCATTTGCCTGGATAGATTCAACAACGAAGCCAAACTAGACCGCTGCTTGCACAAGTTCTGCTTTCGGTGCATACACGAATGGTCCAAAAACAAAGCTGAGTGTCCACTATGCAAACAACCTTTCAACTCCATCTTCCACAGCTATAATGCAAAAAATGACTTTAAGAAGTTCACCTTGCGGCCAACTGAAAATGGCTCTTTTGGCTTTCCTGAGGGGGAGAGGTTCAGGTACCGCACCACCTTGGCAAGAGATCGCAGGCAGATCAATTCCATGAGAAGGACGTCCCCACCACCAGACAATGGGATCATGTTTGAGGGCCTGACAGGTTCTGGCCCGGCTCAGCATGACAGAGGACTTCACCCCATGATACTCAGGTTCAACGCAAGGAGAAGAGCTCAGAATGAGGGCAGGTCATTCCGTCACATGCGGGAGAGAGAGATCATTAATTTCAGACGGGCGCTGTACCGCAGCGGGGTGCGGGTGCGAAGTGTGCGTGATGGCGGCCGCTATCGGGACATCTCTGCCGAATTCTTCCAGAGAAATCCAGCTTGTCTCCACCGGCTCGTGCCCTGGCTGAAACGGGAGCTGACTGTGCTCTATGGCAGTCACGGGTCGCTTGTGAACATTGTGCAGCACATCATCATGACCCGCATCACCAGGTACGACATGGAGGACCAGGCCATCCAGGACGAGCTACGTCCATTCCTGCTGACTCGCACTGACCACTTCCTCCACGAGTTCATCAGCTTCGCCCGGGCCCCTTACAATATGGAAGCTTATGACCAGCACGCCATCTACGACTGCCCAGCGCCGTCCTACGAAGAGGGAAGCAGCTCGGGCTCATCCGTCATCACCATCTCGGCAGATGAGGCCGATTCCGCAGAGCTGGACCAACGCCCTCTCTCTGTAGCAGGCAGCGGCTTGAGCCAGACACCATGGGATGATGAAACACCTGGCCCCTCTTACTCCACAGTGGAACAAGTGCAGCCCCCCTCACTGACCGTCAGTGAGTCTGAGTCTGAGAGCagcagggaggaggaggtgggccCCGGGCCTTCTTTGCAACAGAGTGCTCAAGTGAAGATGGACCCATCGGCAAATGAAGGTGCAGGAGCCTCATCTAGTGAGGAGGATTGCTTAATTGTGGGCTATGTCAAACCAATGGCTGAAAGGACACCTGAACTCGTCCAGTTGTCTTCAGACTCTGAAGAAGAGTCTATccacaatgaaaacacagaggTCCCTAAACAGCCTGCACATATTCGATTCCCTAGCATGAGTCCACCTTCTTCTGTATGCTCCTCAGTGTCAAAAACAAAGTCCCCACAAAGGCACCACCAGTCCAGAAACCAAtctgagggaaaagacagggaCCAGACTGCTTTTGAAGAGAAGAGGATACCACTGGCGTCACAGATCAAGAGAGAGATCGAGGTCCAGGAGCAAAGAAAGGTCCCACCAAAGGAGCAGAAGAAGATCAAGGAGTACTGA

Function

GO:

id name namespace
GO:0010842 retina layer formation biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10631 TOPORS; E3 ubiquitin-protein ligase Topors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115649 lncRNA downstream 204794 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 261781 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 302975 20302000 ~ 20317431 (-) True AMCG00017725
TU115611 lncRNA downstream 700254 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 752770 19867418 ~ 19867636 (-) True G92660
TU115749 lncRNA upstream 2038 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 12567 20634672 ~ 20634880 (-) True G92800
TU115776 lncRNA upstream 49960 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 54554 20676659 ~ 20734422 (-) True G92823
TU115794 lncRNA upstream 195570 20817675 ~ 20822960 (-) True G92836
AMCG00017733 mRNA downstream 4177 20603355 ~ 20616229 (-) True AMCG00017733
AMCG00017739 mRNA downstream 19005 20595312 ~ 20601401 (-) True AMCG00017739
AMCG00017735 mRNA downstream 35445 20571457 ~ 20584961 (-) True AMCG00017735
AMCG00017738 mRNA downstream 48996 20553667 ~ 20571410 (-) True AMCG00017738
AMCG00017734 mRNA downstream 69570 20520218 ~ 20550836 (-) True AMCG00017734
AMCG00017737 mRNA upstream 3979 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017749 mRNA upstream 31040 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017748 mRNA upstream 68116 20690221 ~ 20741395 (-) True AMCG00017748
AMCG00017751 mRNA upstream 126050 20748155 ~ 20774424 (-) True AMCG00017751
AMCG00017752 mRNA upstream 259388 20881493 ~ 20913956 (-) True AMCG00017752
TU115494 other downstream 1201050 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1201050 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2157230 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3146067 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4589501 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2696021 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2696021 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2696021 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5390556 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5390556 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile