RNA id: TU115788



Basic Information


Item Value
RNA id TU115788
length 919
RNA type TUCP
GC content 0.36
exon number 5
gene id AMCG00017747
representative False

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20799595 ~ 20822048 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CATATTTGGAAAGGTTAAGCTTGAGATTATGTGAGTACATCCAAAAGGAGAAAGCAAAGATGCATTAAAAGCTGCTGATTTTGGGGAGAAGCAGCATACTCAAACTTGGCACAGCCTGAAACAAGAAGCCTGAACTCTCATTAGAGCGATCTCAAACCAAGACAACACCATGAACTGCAAGATCACAGTAACTGTTCTCATTCTCTGCCTGGCCTTTGCCACTCTCTCTGAAGGGATGTCTGGGAAGAGTCTGGGAACAGAGCTGCGCTGTCAGTGCATCAAGACGGAGAGTCGCTTCATCCCCCCAAAAATGATTGGGAATGTGGAACTCTTTCCCAGTGGACCTCACTGCAAGGATGTTGAAGTCATTGCTACTCTGAAGACAGGCCAGAAAATCTGCTTGAACCCAACTTCTCCATGGGTCAAGATTATGATTGATGCTATCATGCAAAAcaaaaAGCCTTGAAGTCAAAGATGAAGAATTGTGCAGAGGAGGAAATCTCTTTGatcaacaaacaagaaaaatatgattaatagttttataatgtaatttatgtaactCTCAAATTGTGATACATCAAACATCTGttgacatttaatttcactACTTGAATGTTCCCCCGACAACGTCAACGAGAGGCAGTCAGCACTATATATtgtttgattagatttttttaatttaaataacatgccagtgtacttttctgctttatttaagAAGGATGTTTAagtgtgtgtgaatatttaatatttaagtattatttctCTGGTGACTTGCTGAAAGATTCACATTTTGTATAAATTGacctatttcatttttttatttatgtatttatttgtatttatttttctaccacTGAAtgaagaatatttatttttgaaaagtgtttaatttgtttaagtgTTTAAGAATGtgttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU115785 lncRNA upstream 8744 20790574 ~ 20790851 (+) True G92829
TU115772 lncRNA upstream 42152 20757206 ~ 20757443 (+) True G92819
TU115745 lncRNA upstream 171515 20626341 ~ 20628080 (+) True G92794
TU115683 lncRNA upstream 252672 20494781 ~ 20546923 (+) True G92745
TU115666 lncRNA upstream 335966 20459975 ~ 20463629 (+) True G92728
TU115804 lncRNA downstream 21384 20836930 ~ 20867397 (+) True G92845
TU115805 lncRNA downstream 32870 20848416 ~ 20850614 (+) False AMCG00017745
TU115808 lncRNA downstream 68391 20883937 ~ 20885268 (+) True G92849
TU115840 lncRNA downstream 313154 21128700 ~ 21128980 (+) True G92878
TU115952 lncRNA downstream 1336775 22152321 ~ 22152580 (+) True G92952
AMCG00017750 mRNA upstream 8356 20770093 ~ 20791239 (+) True AMCG00017750
AMCG00017742 mRNA upstream 109348 20680752 ~ 20690247 (+) True AMCG00017742
AMCG00017743 mRNA upstream 122181 20669341 ~ 20677414 (+) True AMCG00017743
AMCG00017744 mRNA upstream 150584 20648430 ~ 20649011 (+) True AMCG00017744
AMCG00017740 mRNA upstream 226140 20571415 ~ 20573455 (+) True AMCG00017740
AMCG00017745 mRNA downstream 32810 20848356 ~ 20850617 (+) True AMCG00017745
AMCG00017746 mRNA downstream 54309 20869855 ~ 20881281 (+) True AMCG00017746
AMCG00017754 mRNA downstream 111479 20927025 ~ 20929610 (+) True AMCG00017754
AMCG00017756 mRNA downstream 136779 20952325 ~ 20965101 (+) True AMCG00017756
AMCG00017755 mRNA downstream 191621 21007167 ~ 21041892 (+) True AMCG00017755
TU115510 other upstream 1271302 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 1375916 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 1387605 19402086 ~ 19411990 (+) False AMCG00017710
TU115411 other upstream 1725933 19073238 ~ 19073662 (+) True G92538
TU115097 other upstream 3193387 17601535 ~ 17606208 (+) False AMCG00017668
TU115792 other downstream 4965 20820511 ~ 20821947 (+) False AMCG00017747
TU116638 other downstream 3889833 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 7827184 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 8617866 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 11591883 32407429 ~ 32411373 (+) False AMCG00018012

Expression Profile