RNA id: AMCG00017749



Basic Information


Item Value
RNA id AMCG00017749
length 2517
RNA type mRNA
GC content 0.47
exon number 23
gene id AMCG00017749
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20653145 ~ 20667672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGTGCTTGAAGTCTCATGAACTGTTTGCATTGTTGCTCTTGGTAGAAGCTGCAGCAGGATGGCACGATTTGGATAACAGTGAGTACGACTGCTGGCCGTTAGAAAAACCCAACGTTTTTAACATGATAGATTGTGGAGGTCTGGAGATGGCTTGGGTGCACAGACCGCCAAGGAAAGTAGTCAGCGGAGAAGAGTTCAATGTGACCTATGCAGTCACCGCTTCTGACGAATTCTACCAGTGGGCTGTGATGAATGGCATATTCACCCACAGCAATGCAACAGCTGCCAAGAAGTTCTGTGAAGAGCACGAGTGTCCTCCAAACTGGAAAGATGCCAATGGGGAGAACTGCTGTGTTCATCATGCCAACATCCACTCATGCCCACTGGGATTCATGAAACATGTTAATGGTGGGATTTGTGGGCCATGGATTCCGGATGACGGGAGGATTTTTACTCACACCATCTCCACTGCCGGCCAAATGACCCAGACTAATTGGACTGCAAAGgtGGTTCTGATTCACGTGGGAGTCACTTCGCTGATTGCTCATATCCGGGTGGGAAATATGCAAGTTGCATTAGAAGCCAAGACCACAGTCTCACCAGCTGTAGTGTGTGGAGATGATGTCTGTGACAAGGACGAGACGTGCTCAACCTGCCCTGCGGACTGTGGCGAGTGCCCCATGACTGCGGCTATCAAGGTTGCCATTTGTCTCCCAATCACCTGTGTCTTTGTTGGCTTTATCCTTGTTGTGGTGTGGTTCCAGTATCAAAAGCAAAAGATGTTTTGGGATGAAAGCTGGATCATTGACTTCAGCCAGATCAAACATGACCAGGTGGCACGGACCACAATGGGCAGCATCATGAGTGTCCCCATGGCCAACAGTGACTCCAACACCAGCTGTGTAACTGCGCTCAGCTCCTGTACCGGAGCTCTCAACTCATCCCACAAACAGCACTTCACCCACACTGGAATATATGATGGTCACACAGttgctattaaaaaaattaagaagaaGACCTTTTCTCTTACAAAAACTATCAGAacagaggtaaaacaaataagAGAGCTAGATCACCCGAACCTGTGCAAGTTCTTTGGTGGCTGTCTGGAAGTGCCGAACGTGGCCATTGTAACCGAGTACTGTCCAAAAGGCAGCCTTAATGACGTCCTCCTCAATGAGGACATCCCTCTCAACTGGGGCTTCAGATTTTCCTTTGCCACTGACATTGCTAGAGGGATGTCATACCTTCACCAACACAAGATTTGCCATGGAAGGTTAAAGTCCATGAACTGTGTGATTGATGATCGCTGGGTTTGTAAAATCACAGATTATTGCCTGTCAACGTACAGGAAAGAAGACACAGATGAATTCCCCAGTTCATACCAGAAGAGACTGCAAGAGGTTTACATGCCACCAGAAGCTCTGTCTTCAAACCTTGAGCCCACACTGGCAGGGGATGTGTTCAGttaTTCCATCATATTACTGGAAATAGCCACTAGAAGTGACCCTGTCCCAGCTGAAGATAGTTCACTTGAATGTTCGTGGTGTCCTCCCCTGCCTGAGTTAATCACGGGTAAAGCAGAAAACACCTGCCCTTGTCCATCAGAGTATGTGGAGCTCATTAGGAGATGTCGGGCCCATAATGCTGCCCATCGACCTACATTTGAACAAATAAAGAAGTTTGTGTGTAGAATCAACCCCAACAAAGTCAGCCCAGTGGATATGATGATGAATCTGatGGAGAAATACAGCAAACATCTGGAAGTGCTAGTTGGTGAACGGACACAGGATCTGGTAGCTGACGATCTTAGACAAGGAAAGCCATTACAGGCTCAGAGCTATGTGAGTGCAACAGTGTTTTTCAGCGATATTGTGGGGTTCACACAGTTGTCGAGCACCAGCACACCATACCAGGTTGTCGAGTTCTTAAACAAACTCTACACAACGTTTGATGAAATCATAGACAATTATGATGTTTACAAAGTTGAGACTATTGGAGATGCATACATGGTTGTTTCTGGAGTTCCCAGGGAAAATGGAATACTCCACGCCAGTGAAATCGCCAGCATGGCTCTGGATCTGGTTGCTGTTTGTAAGACCTTCAGAATCCCacacaaacccaacacacaGCTACAGATCCGTGCTGGAATTCATTCGGGACCTGTTGTAGCAGGAGTGGTTGGGACTAAGATGCCCAGGTACTGTTTGTTTGGTGATACTGTGAACACAGCTTCAAGAATGGAATCCACCAGTGAAGCATTGAAAATTCAGTGCAGTTCTGGCACCTTTTATCTTTTGGAGGAGATTAGtggctacattttaaactgtcGTGGAATGCTTCAGGTGAAGGGAAAGGGTGATATGGTGACCTACTGGCTGGAGGGGAAGCAAACCATGCCCGTTAATAAGGAAATGGGAAAGAAATCCCCCGCTGTGGCAGAAAATGAGAAGGACCATTATACTTCCATCCCAGGGTTCCTCAGTAATGACCTTCACACCAATCCAGTCTAA

Function


GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU115751 lncRNA downstream 18265 20634672 ~ 20634880 (-) True G92800
TU115749 lncRNA downstream 28725 20624143 ~ 20624420 (-) True G92798
TU115649 lncRNA downstream 237533 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 294520 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 335714 20302000 ~ 20317431 (-) True AMCG00017725
TU115776 lncRNA upstream 4393 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 8987 20676659 ~ 20734422 (-) True G92823
TU115794 lncRNA upstream 150003 20817675 ~ 20822960 (-) True G92836
TU115796 lncRNA upstream 152794 20820466 ~ 20821995 (-) True G92838
TU115857 lncRNA upstream 460799 21128471 ~ 21128999 (-) True G92892
AMCG00017737 mRNA downstream 25162 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017741 mRNA downstream 31040 20620406 ~ 20622105 (-) True AMCG00017741
AMCG00017733 mRNA downstream 36916 20603355 ~ 20616229 (-) True AMCG00017733
AMCG00017739 mRNA downstream 51744 20595312 ~ 20601401 (-) True AMCG00017739
AMCG00017735 mRNA downstream 68184 20571457 ~ 20584961 (-) True AMCG00017735
AMCG00017748 mRNA upstream 22549 20690221 ~ 20741395 (-) True AMCG00017748
AMCG00017751 mRNA upstream 80483 20748155 ~ 20774424 (-) True AMCG00017751
AMCG00017752 mRNA upstream 213821 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017753 mRNA upstream 461685 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017759 mRNA upstream 628375 21296047 ~ 21304123 (-) True AMCG00017759
TU115494 other downstream 1233789 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1233789 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2189969 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3178806 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4622240 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2650454 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2650454 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2650454 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5344989 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5344989 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile