RNA id: AMCG00017751


Basic Information

Item Value
RNA id AMCG00017751
length 858
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00017751
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20748155 ~ 20774424 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGACTGAGCCCAGGAAACTGCAGGAGAGCCCCGAGAGCAAAGTGGAGCGGCTGGGGCAGTTGTTCAAGCACAATGTCAGGAAGCTGCGAGAGAAGAGCCACAGCCTGGACCTGGTGTTCCTGGTGGATGAGTCATCCAGCGTGGGCAACACCAACTTCCTCAACGAGCTGAAATTTGTGAAGAAGCTCCTCTCTGATTTCCCCGTGTTGCCCTCTGCCACGCGAGTGGCCATTGTGACTTTTTCATCCAAGAACAATGTGGTGCCCAAGGTCGACTACATCTCCTCTCCTCAGTCCCACCAGCACAAGTGTTCCCTCTTCAACCAGGAGATCCCTGCCATCAAGTATCGGGGAGGTGGGACCTACACCAAAGGAGCCTTTCAGCAAGCTGCAcAAATATTGCGCCATTCACGCCAAAATGCAACAAAAGTAATATTCCTCATTACGGACGGCTATTCCAATGGCGGTGACCCCCGACCCACGGCAGCATCCCTGCGGGAGATGGGAGTGGAGATCTTCACATTTGGGATATGGCAGGGGAATATCCGGGAGCTCAACGACATGGCCTCCCACCCCAAGGAGGAACACTGCTACCTCGTACACAACTTCGCCGAATTTGAGGCTCTGGCTCGTAGAGCTCTGCACGAAGCTGGACAGGAGTGCTGCGACGTGATGGCCAGCTGTCAATGTGGCACCCACACTGGCCAATACGACTGCATTTGTGAGAAAGGGCACTATGGGAAAGGACTACAGCATGAATGCACAGAGGCCGAGGCAGCGGTGGTTGTAGCGGCTGTGCGGATGGGAGACCTTATCTCTGAGCAGCTGCCGACTTCCTGCCAGGCTGCACTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115778 lncRNA downstream 13733 20676659 ~ 20734422 (-) True G92823
TU115776 lncRNA downstream 71877 20672065 ~ 20676278 (-) True G92822
TU115751 lncRNA downstream 113275 20634672 ~ 20634880 (-) True G92800
TU115749 lncRNA downstream 123735 20624143 ~ 20624420 (-) True G92798
TU115649 lncRNA downstream 332543 20415306 ~ 20415612 (-) True G92714
TU115794 lncRNA upstream 43251 20817675 ~ 20822960 (-) True G92836
TU115796 lncRNA upstream 46042 20820466 ~ 20821995 (-) True G92838
TU115857 lncRNA upstream 354047 21128471 ~ 21128999 (-) True G92892
TU115940 lncRNA upstream 1199560 21973984 ~ 21974289 (-) True G92943
TU115945 lncRNA upstream 1270556 22044980 ~ 22124742 (-) True G92947
AMCG00017748 mRNA downstream 6760 20690221 ~ 20741395 (-) True AMCG00017748
AMCG00017749 mRNA downstream 80483 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017737 mRNA downstream 120172 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017741 mRNA downstream 126050 20620406 ~ 20622105 (-) True AMCG00017741
AMCG00017733 mRNA downstream 131926 20603355 ~ 20616229 (-) True AMCG00017733
AMCG00017752 mRNA upstream 107069 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017753 mRNA upstream 354933 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017759 mRNA upstream 521623 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017758 mRNA upstream 542043 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017757 mRNA upstream 624877 21399301 ~ 21403260 (-) True AMCG00017757
TU115494 other downstream 1328799 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1328799 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2284979 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3273816 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4717250 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2543702 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2543702 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2543702 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5238237 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5238237 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile