RNA id: AMCG00017763


Basic Information

Item Value
RNA id AMCG00017763
length 7903
RNA type mRNA
GC content 0.46
exon number 43
gene id AMCG00017763
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22309249 ~ 22366047 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCTGGGAGGGTGACCAGTGCAGAGGTCGCTGTTGCTGCACATGTCTGCGGAGGATCGGGTTACAGTGCAGCCCATCACTCTGTGCGCCGTTAGCGACAGGGCAACACCGCATACGAAACGTCCTGCACTGCGAGGCCAGGCAGGAAATCACCCGGCGTGTAtGTCTAAGTAAAGAAGGCATTCTTAATTGACTGGGCTGCTTTACTTCTCTTTGAAAATGATTGAAACTATTGACACCCAGCGTGCTTTGCAAGCGGTGGAGCGCCTTCAGGCCAAGCTTAAGGAGCGAGGCGATGTCCCCAGTGAGGAGAAACTGAACTTGCTAAAGACAGTCCTACAGAGCCCCCTGTTTCACCAGATCCTCAACCTTCAGACCTCTGTACAACAGCTTAAAGAACAGGTGAATGCAgtgccagtgtcagtgtctctTCATAACGAACTCTCCCAATCAATCAACCCTGGCCTTTGCTCTCTTCCGTTGAGCGAGTCCTATGTGTTGGCACAGCAGAATGGCAGTCTTGGCATGCAGGGAGATTCCCCAGTGGTTCCAGTTTCCCCACAGATAAATGGTAAACCATCAGCTGATGAGTTTGAGCACATCATTCGGTCAATGGCCCAGGGCCGGTATGTAATGCACATTGAACTTGAGAAGCCACTCTCTGGTGGGCTGGGGTTCAGTGTAGTGGGCCTAAAGAGTGAAAACAGAGGGGAACTGGGCATTTTTGTTCAGGAGATCCAGCTGGGCAAGGCTGATCAGATCTTATCCATCAACGGACAACCACTTGACCAGACCATTACTCATCAACAAGCTATCAGCATCCTCCAGAAAGCCTCAGAGAAGGTCGATCTCATTATTGCAAGAGGCCCTATTCCACAGCTGGCCAGTCCAGTGGTCTCCAGGACACCTTCTGCAGCCAGCACTCTGTCAGCCCACTCCAGCGCGACACACTGGCAGCATATGGAAACAATTGAGCTGGTGAATGATGGGACAGGTTTGGGATTTGGAATAGTGGGAGGAAAGACCACTGGTGTCATTGTGAAAACCATCCTGCCTGGTGGAGTGGCAGATCAGGATGGCCATCTGCACAGTGGAGATCATATTCTGAAGATTGGTGACACTGACCTGCATGGCATGGGCAGTGAGCAGGTGGCCCAAGTGCTCCGGCAGTGTGGCAACAGAGTGAAACTGGTCATTACAAGAGGAGCCATGGAGGAGTCCTCGTCCGGCCCACCTCCACCAGTGCTAGCTCCTGTAGCAGAGCAGCAGGGTGAACTGACAGATGATGAAGAGGATGATCTTGATGCATTTGATGTGGAGCTGACCAAAAATGCACAGGGTTTAGGAATTACTATTGCTGGCTATGTGGACAGGACAAATATTCAGGGCTTCACTAACCAACAAGCAGTGGAGGTCCTGAGACACACCGGGCAGACAGTGCATCTGACTCTCATCAGGAGAGGGTTCACAGCCGAGGAGCAGCTCATTTCAGAGCTCAGGCCGCCGCCCGCAGATGTTAACGAGCTGGATGTAGATAGAATAGATTCAGACACTACCACAGAGGATCTAGACAGAATCCAGACACTGCACCCGTCCCTGTGTGGAGGTTCGAATTTGACTCCTGTCGAGGATGAACAACTGCACCCTGAAGGAGGAACACAGCAGACAACAGTAGATGAAGAGGAGCTGAAGAAAAAATGGGAGTCTGAGCTTGGTCCTAGCAATGAAGTAGTGATTGCTCAAGTTCAAAAGTTCAGTGAAAGCAGTGGACTTGGCATTAGCCTGGAAGCATCCACTGGGCACCATTACATACGCTCAATCCTGCCAGAGGGACCAGTTGGACGCAGTGGCAAGCTGTTCAGTGGAGATGAACTGCTTGAGGTTAACGGAATATCTTTACTTGGCGAAACTCACAAGGAGGTTGTTAGTATTTTAAAGGAGCTACCTCTCTGTGTGACCCTGGTGTGCTGTCGTCCAGCCTTGCCCTTTCAAAGTGACTGTGATATTACCACACACCACCTTCCAGAACAATGTGCTGAACCAGTTGAGAAGGTCCATGTAGACATTGATGAGTGTGTTGCTTCTTTTGAAACGGATGACCctgtaaaaaacaatGACCCCGTTGACCCAGTAAAAACAGTGATAGTGATCCGCTCCCTGGTGCCCGATGGTGTTGCAGAACTGGACGGCCGTCTGCTTCCCGGGGACCGGCTCATGTTTGTCAACGATACAAACCTGGAAAATGCGAGTCTGGAGGATGCAGTGCAGGCGCTGAAGGGGGCAGCGATTGGAATAGTCAGAATTGGAGTGGCCAAGCCCTTACCTCTCACCCCAGAGGAGGGCAATTCTTCTTCTAAGGATGAGTCCGTCTTCTACACTGCTCAGCAGtttgaggaggaggagcctgCTGATGCTGCAGTTTTCCATGCAGAACTAGCACTGATTGACTCAAACGAAGCAGACATGACTGACAAGACGTTTGATTCTCAGTACCTAGGGGAAGAAGACGACACATTTCAAGCCTCCATGTTAGCGTTGCATGGCAGTACATGCAGTGTGGATCTGGATTACCAGCTTTCAGTGCAGTCGTCTACACCCAAGACTTCCCATGAAGAAGCATTTGCAAATCCCTCATTTTCAGCAGTGTCTGAATTTGCTGATGAATCAGAGCCATTTTTCCCTGAAGAGAAACCAATCACTCTTTCCCAACCATGGACTGCTTCAAGTTCAACGTTACCAGATCGAGCTGCTAACAAAGATCTGTCTCTTGAGCAGCACTTAAGTATATTGGAGAGAGAGCATGTAATGCCAGAGATTGTACAATCCGAACCAAGTTCAGGTTTTAACCATGAGAGAAAGCCTGTGCAGTCTTTTGAGACACCGATGGAATTGGACAAGGCAGCTGATGCCTGTGCAAACTATAAGTCCAGCCATGAAGGCAGTGTGGCCACAGATCCAATCAAAGGTGATATAGATGATAGATCATCTCATCATGAAGGCTTTGCAGCTGTAAAGGATGAAGAACATTGTGTGGATCAAGGACCTGAGGAGAAGGTTGATAAAGAAATGTTCACACCTGGAAGCAGTTTTGAGAGGACAATCACTGTTGTCAAGGGCAACTCTAGTCTTGGAATGACTGTGAGTGCTGTTAAGGATGGCTCAGGAATGATTATTCGCAGTATCATTCATGGTGGATCCATCAGCCGAGATGGACGACTTGGTGTAGGAGACTGCATCTTAGCTATCAATGGGGAGCCAACTACTAATCTAACCAATGCACAGGCTCGTGCCATGCTGAGAAGACACTCCCTCATTGGGCCCGATATAAGTATCACCTATGTTCCTGCTGAATATCTGGAAGAATACAGGAGCAGCTTGGGTCACCAGAAGGATGAAACTATATCTGTTGAAGGAGCTCCTTCAACATGTGGGGAGTTCCCTGAGCTTCCTGAGCGAGAAGATGGGGAAGGAGAAGAGAGTGAGCTACAGAGTGCTGCCTACAACAACTGGAACCAGCCGAGGAAagTAGAGCTATTTCGGGAGCCTGGTAAATCTCTTGGCATCAGTATTGTTGGCGGCAGGGGAATGGGCAGCCGGCTCAGCAACGGAGAGGTGATGAGAGGGATCTTCATCAAGCACATTCTGGAGGACAGCCCTGCGGGAAAAAATGGcacactgaaaacaggagacagaaTAGTGGAGGTGGATGGAAATGATTTACGGGACGCCAGCCATGAGCAGGCAGTCGAGGCCATCCGCAAGGCCAGAAATCCTGTGGTGTTTATGGTCCAGAGCATCGTGCACAGACCCAGAGCACCACCAAACAGATTGGATATGGATACAGGCAAGACATCTCCTCCTGTCCCCACACTGCCTCCTCTCCCAATGGTGCCTTACGCTGGTGAGACAGATACGGACGCACTGCCAGAGCCCCCAGAGAGGCCTGCCTCGCTGCCACAGTctccagaggaggaggaggatgaattTGGCTATAGCTGGAAAAAGATCATACAGCGCTATGGGAGCTTGCCAGGGGAGTTACACATGATTGAGCTGGAGAAAGGGAAAACTGGGCTGGGTCTCAGCCTGGCTGGCAACAAGGACCGCTCCAGAATGAGTGTGTTTGTAGTGGGAATTGACCCGTGCGGTGCTGCTGGGAAGGACAAACGGATCATTGTTGGAGACGAATTACTAGAAATAAATGGCCAGATTTTGTATGGCCGTAGTCATCAGAATGCTTCCTCCATTATCAAAAGTGCCCCCTCTAAAGTGAAAATCATTTTCATCAGgaacacagacGCCCTGGACCAGATGGCTGTGGGTCCAGTGAAAGAAAGTGGAGACATGCTAGAATCACAGACTGAGGACCAAGGGGGTCTGGGTATTGCCATCAGTGAGGAGGATACCAAGGGCGGTGTGGTGATTAAGAGTTTAACCGAGCATGGTGCAGCAGGACAGGATGGCAAAATTAAAGTTGGAGACAAAATCTTGGCAGTGGATGATGAAAGTGTTGTGGGATGTCAAGTGGAGAAGgTTATTAATTTGCTTAAAAAGGCAAAGAGTACTGTGAAGCTGACAGTTTGCTCAGAAGATCTGCTATCTCATATATCCTGTGCAAATCTCCCAGAGAGTGTCTGTGATGTAAAGATAGCCAATCCCACCACATCAACATCCATTACTGTTGGGGCCCCAGATACAGAGCCATTTAAAActtCAAGTAGATCATCTACTCCAGTGACTATGGCATCAGACCCCATCACCTGCCCCATCATACCTGGGTGTGAGACCACTATTGACATCTCCAAGGGACGGACTGGGCTTGGGCTGAGCATTGTGGGAGGATCTGACACACTCTTGGTTAATGGAATTGACTTAAGAATTGCCACTCACGATGAGGCAATCAATGTCTTGAGACAAACTCCCCAAAGAGTGCGTCTGACAGTATACAGGGATGAGGCCCAGTACAAGGAGGAAGACATGTGGGATGTGTTCTTTGTGGAGCTACAAAAGAAGCCTGGAGAAGGATTAGGCCTCAGTATTGTTGGAAAAAGGAATGACACTGGGGTCTTTGTGTCAGATATCGTGAGAGGAGGGATAGCGGACACAGATGGTAGACTCATGCAAGGAGACCAGCTTCTGTCTGTGAATGGGGAAGATGTTCGCTCGGCAACACAAGAATCTGTCGCTGCTTTATTAAAgTGTTGCATTGGACCAATAAATCTAGAACTTGGCAGGTTTAAAGCTGGACCTTTTCATTCAGAGAGGCGATTATCACACAGCAGCCAGGTCAGTGAAACAGGGAGCTCTGGAGCAGAATCGTTCACTTTGTCTGGGTCTGGTTGTGTCTTGGGGGATGACATTGAAATATCCGACTTTCAAGAGCTCAGAACAGTTGAGTTTACAaaggaGCCTGCAGACTCTCTGGGAATCAGTATTGCTGGTGGAGTAGGAAGCCCTCTTGGAGATGTCCCAATATTTATTGCCATGATGCACCCCACTGGACTGGCAGCACAGACTCAGAAACTAAAAATTGGAGATCGTATTGTGAGCATTTGTGGGACATCTACTGAGGACATGAGCCACTCCCAGGCTGTCACCTTGTTAAAAAATGCCTCAGGGACAATTGAGTTACAGGTGATTGCAGGAGGTGATGCAAGCGTGACCGGTCCTTTTCAAGACAACGCGGCCGCCAGCCTATCACTGTCAGGGCTGACAGCAAGCAGTATTTTTCACGATGACCTCGGGCCTCCTCAATACAAGACTATTACACTTGACAGAGGGCCTGACGGTCTGGGCTTCAGCATTGTTGGAGGATTTGGCAGCCCACACGGAGACCTCCCCATTTATGTTAAGACGGTGTTTGTCAAGGGGGCAGCTTCTGAAGATGGCCGTCTGAAGCGTGGAGACCAGATTATAGCTGTGAATGGACAGAGTCTGGAAGGAGTCACCCATGAAGAGGCAGTGGCTATTTTGAAAAGGACGAAAGGCACCGTGACTCTCACTGTACTTTCATAAATGTTAATTCACTGGATTAGtttaatacttttgtttttctgcaattGTAGCAATGAGCactgtgattattttatgtGACCTTGCTGTAACCCAGAAACCTTCCATACAATGCGTTCACAAATGGGTACAAAATGTTGTTTACTTTTATGAAGCCCACAGATGATGGCAGTGAGGAGAATGTTTCTTAAGCATAACAGGTTGCTTAGCTATAAAGACACTCACTGATCATAGTAATCCGAGGAGTGCCCACAAAAAGAACAACCCTCAGTGAAGatcatgttttaaattcatgcatacattttatGCAATTATTTGAAAGTCCTCAAAGCCCATTTGTTTAACTCTTTATAGACAatcatgctttcatttttttattaagtgcACCTGCTGCACTTGAGTGTGTTCTATACTTTTATCTCTAAAGCATGTACAATATTGAAAAATCTTTTCTCCATCGATTGCAGACACACTCTGAATGATAAACGctcaatttcaattttgttaGGGTCCCATTTGATGCTACCTTCTTCTGACATACACAATAGTTATGTGGTCTCAATTTAGTGTCCCTGAGAGTATTGTCAAAAGACAAACAGCATGTATTGTTGCAGAAggtattattttaagatttttttcatctttatgtAACAGGGGCCCAGGTGACAAATAGACGGTGTCAGTGTTTATTCCAAATGCTCAATATATTTACTAATACTATCTTAAAATTCTAGAAACAGCATAtgacatttctaaataattgGCAAATGAGGGGTGCACTACTTACCATAAGGTTTTTAATGTTGAATGAGTGTCTATGGACCCCATTGCTGGATTcatggttgttttgtttttgtgtagaaaacaatatatatatatatattggctgaatgtatatatatttttaaactaattatCTAGCAGCTCTGTTAGATAGGGTACCACTAACATGCAGGAATGTTATGATGCTGTAATTAATTTCTGATTAGTGGAAATGTGAGGGATCACGAAAAACTGCTAATAAATACTACGATGTTTGTAAATTccccaaaatacattaaacctCTATAACATTGTCTTATTGCTGTTGAGTTcatgaaaaacaatgtgtaaCTTTTGCTGTTCATAGAACAATTGTGATACGCCGAGGTGTCTTGTTTTCCGTGGCGTTTGTTATTCTGTTAGAACCAGTTTTTAGTATTGATACACGAATTTCAGCTGTATGATGACTAATCAAATAAATCACTTACTATAAGattaataaacatattgtaTCAGAGTGGACATTATGGAGACGAATTGGTGAAGTATGTTGAAAGAATAATGAAAAGGCATAGCACTCAGGGAAGAGTTAAAAGAAGGATAGTAGTTTAAGATAGATTACTAGTAAGGTGTATGCTAGTGCCGATGCATGTTCCAGTGACCTGTTGTTCTGCGGTACGTCTTGTTTTCATCCGTTTTCTCAGTTGGAGAAAAGTtgttaatgtataatattaagGTGCGATGCTCCCCCTAAtgtgtaatgcttttaaaacattatatggCTGGTGGtagtattataatttttcatatgtgtatttcaaatatgtgttttccttttctcctttcCTCAATGTAAGTATCTTTTTCAGTATCGTTAATTAATGATCCTGTCATTTCTCTCCAACTGAATAAATGAAAGTGACCTTCCAGTGACTGATGTTGGTTCTCAAGTTCAATTATATGGatagcaaagaaaaacagaaggcCTGGGATAATAGGCATTATGGAAAATAGGAATTTCTTCtctgagcaaaataaatacatttccagacCAACTAAGTTTCAGTAGTTTAAAggttaaacaaacagaaactaaTGGACTGTGtgatatttaagaaaaacacttgGC

Function

GO: NA

KEGG:

id description
K06095 MPDZ, MUPP1, Patj; multiple PDZ domain protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115974 lncRNA downstream 34272 22272981 ~ 22274977 (-) True G92972
TU115955 lncRNA downstream 88469 22220521 ~ 22220780 (-) True G92955
TU115953 lncRNA downstream 156671 22152372 ~ 22152578 (-) True G92953
TU115945 lncRNA downstream 184507 22044980 ~ 22124742 (-) True G92947
TU115948 lncRNA downstream 215844 22092965 ~ 22093405 (-) True G92948
TU116050 lncRNA upstream 320377 22686424 ~ 22689677 (-) True G93024
TU116052 lncRNA upstream 324628 22690675 ~ 22691532 (-) True G93026
TU116057 lncRNA upstream 411757 22777804 ~ 22778099 (-) True G93028
TU116062 lncRNA upstream 435324 22801371 ~ 22804384 (-) True G93033
TU116067 lncRNA upstream 473104 22839151 ~ 22839434 (-) True G93038
AMCG00017757 mRNA downstream 905989 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 939760 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017759 mRNA downstream 1005126 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017753 mRNA downstream 1172689 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017752 mRNA downstream 1395293 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017776 mRNA upstream 803526 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017777 mRNA upstream 897987 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017782 mRNA upstream 930641 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 952046 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 964897 23330944 ~ 23345917 (-) True AMCG00017781
TU115494 other downstream 2889893 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 2889893 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 3846073 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 4834910 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 6278344 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 952079 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 952079 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 952079 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 3646614 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 3646614 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile