RNA id: AMCG00017764


Basic Information

Item Value
RNA id AMCG00017764
length 407
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00017764
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22590793 ~ 22593980 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCGTCTTCCTCGGTGCTCATATACATGGACACCACAACAACGAGGACAACAACGAGATCCACTCCCATCACTACCACAAGAGCATCGTTGACTTCCACAGCAGGCCGGCGCGCAAagagcaccaccaccaccgtcGTTGCCATGTTTGGAGATATCCCAGAGATCACCACACGGCCAGCACCATCGTCACAGCTACCAAACATAGGCACAGACTATTGCAGCCCATTGGAAGACTCTGACATTTCCTGGCCCAAGACACATCAGGGATACGTTGCTAAGCAGCCATGCCCTACAGGGACAATAGGGATTGCAACTTACATATGCTTGGCGCCTGATGGGTACTGGGATCCACAAGGACCGGACCTCAGCAACTGTACTTCGCCGTGGGTCAATCAGATAACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115956 lncRNA upstream 358901 22231457 ~ 22231892 (+) True G92956
TU115954 lncRNA upstream 370014 22220524 ~ 22220779 (+) True G92954
TU115952 lncRNA upstream 438213 22152321 ~ 22152580 (+) True G92952
TU115840 lncRNA upstream 1461813 21128700 ~ 21128980 (+) True G92878
TU115808 lncRNA upstream 1705525 20883937 ~ 20885268 (+) True G92849
TU116054 lncRNA downstream 183748 22777728 ~ 22778103 (+) True G93027
TU116068 lncRNA downstream 284098 22878078 ~ 22878468 (+) True G93039
TU116134 lncRNA downstream 707635 23301615 ~ 23328984 (+) True AMCG00017783
TU116140 lncRNA downstream 726471 23320451 ~ 23321055 (+) False G93100
TU116141 lncRNA downstream 726471 23320451 ~ 23321055 (+) False G93100
AMCG00017767 mRNA upstream 27832 22562011 ~ 22562961 (+) True AMCG00017767
AMCG00017762 mRNA upstream 317437 22269271 ~ 22273356 (+) True AMCG00017762
AMCG00017760 mRNA upstream 327275 22257375 ~ 22263518 (+) True AMCG00017760
AMCG00017761 mRNA upstream 336709 22156801 ~ 22254084 (+) True AMCG00017761
AMCG00017755 mRNA upstream 1548901 21007167 ~ 21041892 (+) True AMCG00017755
AMCG00017769 mRNA downstream 2067 22596047 ~ 22596337 (+) True AMCG00017769
AMCG00017768 mRNA downstream 21942 22615922 ~ 22640911 (+) True AMCG00017768
AMCG00017765 mRNA downstream 67086 22661066 ~ 22668453 (+) True AMCG00017765
AMCG00017766 mRNA downstream 92578 22686558 ~ 22687322 (+) True AMCG00017766
AMCG00017772 mRNA downstream 413043 23007023 ~ 23020463 (+) True AMCG00017772
TU115792 other upstream 1768846 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 1775247 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3062500 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 3167114 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 3178803 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 2111399 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 6048750 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6839432 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 9813449 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9867318 32461298 ~ 32465063 (+) True G94838

Expression Profile