RNA id: AMCG00017768


Basic Information

Item Value
RNA id AMCG00017768
length 999
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00017768
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22615922 ~ 22640911 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAGAGACCGTTAACAACCTCCTTCAGCCCCAAGCCCAGGCAGCCTGGAAAGACCTGACAGCCAGTGACCAGCTGCGGGCCGCTACCATGCTTTTGGACACTGTGGAAGAGGGTGCCTTTGTCCTAGCAGACAACCTGCTCAAGACCGACATCGTGCAAGAAAATACAGAGAACATCCGTGAGATCAGAATGGCCTTTGTTCTCTACAAACACCTGGGCGCCTACCTCTCCACAGAGAATGCCAGCATGAAGTTAGGAAGTGAGGCCATTTCTACCAACTACTCCGTCATTGTCAACTCGCCAGTAATCACCGCTGCCATTAACAAGGAGAGCAACAAAGTCTACCTGTCAGACCCCGTGATCTTCACTGTCAAGCACCTGCAGCAATCTGAAGAAAATTTCAACCCCAACTGCTCTTTCTGGAGTTATTCTAAGCGTACCATGACTGGATACTGGTCAACCCAAGACTGCCGGCTGCTGGGGACAAACAGGACGCACACGACCTGCTCTTGTACACACCTCACCAATTTTGCGGTTCTGATGGCACATGTTGAGGTTAAGaatacaGATCCAGTGCATGACATGCTCTTGGATGTTATCACCTGGGTTGGGATCCTTCTATCGCTGGTCTGCCTGTTGATTTGCATCTTTACTTTCTGCTTCTTTCGGGGTCTTCAAAGTGACCGCAACACAATCCACAAAAACCTTTGCATCAGCCTTTTCGTTGCTGAGTTACTCTTCCTCATCGGGATAAATCGTGCTGATCAGCCGATTGCCTGTGCTGTCTTCGCGGCACTGCTGCACTTCTTCTTCCTGGCGGCCTTCACATGGATGTTCCTGGAGGGGGTGCAGCTCTACATCATGTTGGTAGAGGTGTTTGAGAGCGAGCACTCCCGCAGGAAGTACTTTTACCTGGTGGGATATGGTGTCCCGGCGCTGATCGTGGCGGTGTCCGCCGCGGTGGACTACAGGAGCTACGGGACTGACAGAGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115956 lncRNA upstream 384030 22231457 ~ 22231892 (+) True G92956
TU115954 lncRNA upstream 395143 22220524 ~ 22220779 (+) True G92954
TU115952 lncRNA upstream 463342 22152321 ~ 22152580 (+) True G92952
TU115840 lncRNA upstream 1486942 21128700 ~ 21128980 (+) True G92878
TU115808 lncRNA upstream 1730654 20883937 ~ 20885268 (+) True G92849
TU116054 lncRNA downstream 136817 22777728 ~ 22778103 (+) True G93027
TU116068 lncRNA downstream 237167 22878078 ~ 22878468 (+) True G93039
TU116134 lncRNA downstream 660704 23301615 ~ 23328984 (+) True AMCG00017783
TU116140 lncRNA downstream 679540 23320451 ~ 23321055 (+) False G93100
TU116141 lncRNA downstream 679540 23320451 ~ 23321055 (+) False G93100
AMCG00017769 mRNA upstream 19585 22596047 ~ 22596337 (+) True AMCG00017769
AMCG00017764 mRNA upstream 21942 22590793 ~ 22593980 (+) True AMCG00017764
AMCG00017767 mRNA upstream 52961 22562011 ~ 22562961 (+) True AMCG00017767
AMCG00017762 mRNA upstream 342566 22269271 ~ 22273356 (+) True AMCG00017762
AMCG00017760 mRNA upstream 352404 22257375 ~ 22263518 (+) True AMCG00017760
AMCG00017765 mRNA downstream 20155 22661066 ~ 22668453 (+) True AMCG00017765
AMCG00017766 mRNA downstream 45647 22686558 ~ 22687322 (+) True AMCG00017766
AMCG00017772 mRNA downstream 366112 23007023 ~ 23020463 (+) True AMCG00017772
AMCG00017774 mRNA downstream 461051 23101962 ~ 23129457 (+) True AMCG00017774
AMCG00017773 mRNA downstream 502561 23143472 ~ 23152780 (+) True AMCG00017773
TU115792 other upstream 1793975 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 1800376 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3087629 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 3192243 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 3203932 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 2064468 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 6001819 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6792501 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 9766518 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9820387 32461298 ~ 32465063 (+) True G94838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030400 False 4365 mRNA 0.52 20 NC_007113.7 1714734 ~ 1903660 (+)