RNA id: AMCG00017770


Basic Information

Item Value
RNA id AMCG00017770
length 2255
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00017770
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23271599 ~ 23276170 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagccaatcacagcgctGCCCCATTTTACagctgccgctgctgctgtctgtgtcATCCAGGCCGCAAGGAGCAGCGAGCAGGGAGAAGCCTTTTCAAGCATCCCCTCCGACAGGCACAAAGCTGTTGGATACTGGTGTAAATCTATCACCGTCCCTCATCTAGTGGCAATGACAGGCCTGAACGCCAGCCAGCCATGGCACCCCCCTGCGCACGCCGCAGACCTGTCCCTGCAGGTTCAGGAGATGTACCCATTCCACGACGGCTGGAACACAGCTTGCTTCGTCATACTGCTTCTCTTCATCCTCACAGTGGTCTCCTTGGCCGCCCTGGCCTTCCTCTACGAGCTGCTGGACTGCGGCTGCTGTGCCAAGGGGAAGACAGAGCGGGAGCTCAGAGAGCAGCCGGGGCCCCTGCGCGCCATGATGGAGAGCGTGCGCAAGAGGCGGGTGGAAGTGGTGTAAGTTCACCACGATGCCAATTCACGCTGCCAGACTTCGCTTGCTCTGCACCACAAAGCAGAAGGAACGCAGCCACCTGGACGACCCAGACACACAAGGACAGGAGCTCAGGCATTACTACTGAGAGCACATCTGTCAATCAGAGAGGCTGGGACTGGTGGGATGGAAGTTGCCTTGTAGCAAGTCCACGCCCATTTAACAGGTCCCATTTCTTTCTATACGGCAATGGCAGGCTACACTGTCAGCACATTGGCTGCAAAACATTCTGTGTATCCCCTGTAAACACCCTACTTCATAATGgacaaataaatgtacaacatcAATGCCAACACAGCAATTATTTCCGTAGGTTATTTACCAGCTAACCGATCAGGCAAACGCTTCTGACTGTTCATCAAAATGTTCCTGCACTCCCTGTCATATACTCCATTGATTTCAAACACCAAATGCCTAATATGACCTGCAATAGTAAAGAGTaggctaaattaaaaaaaataataataaataaataaataaataaaattggaaagaaaaactgacGGGACCCTTCATGAAcattaacacactgacacacaatcttgccttatttaaataatgctgtactgtatttttctgtaaCTGAGCTGGAGGTCACAGATAATCAGCTTGCAAAATGTaagcagtaaaaacaaaagcttcGAGCAAAGATGACAAGTTCAATCAACAGTTTTCTGTTGAAAATCATCAGCCTTGGAAGTAAAAACTTAAAAGCCACCTTCAAAGCACTGTGCATTTAGCATGAATCCCTGTCATAGGACATCTAGAGAGAAATGTCTATTCCAAATTGAGAGATTAACTTCTCATTATTTAGAGCCCACATCTCATTAACCTTGACATCTACTGCATATCTAATTGGAAAACCAAGTGCTGATTATAGAAACATCTCAGCTGACAGCATGTGTCACACACATTCATagcttttaaatgtcattaactTGCCTTCTTTGTGTGAAACACAAAATCCTGACTATACTGTACATCAGCCTTGCATTATAGAGCACATTATGTATACACTTGCCTTAAAACAATGTACTTTTAGATTAAAACAATTAGAATCTGTACTTTTGTCTTGATCTCTCAATGTATCTGCCCTCATTGATTAAGTCCAGAATTCCATGCACCAAAGAATGCATACTGAATATGTCTTCCttcttggggggaaaaaaaagtggtttatGATACTAAGCTTGATATTATGCACCTGCACATTGCTTCCTCTAATTTTCACACAGTCTGCACAGTGAAAAATAGTGGTATGAGTCAGAAACCGCATGCATGGTTTATGTGAACATCATTAACATTCATTCATAACTTATCTAATATgtcaaacaattaaattaacaggGTTCTTTCAAGAGGCTTAACTGGCAGAGAGGCTCATTTACAGGATCAAATCCATGTTGTACCATGCAGCATCTGTGGCAAGGGGTCCTCAGTATTTGAGCCAAAAGCGTTTGAATTCCACATCCACACTGTGTGGGAACCAGACTAACATACAGTCACCTCCACTGCTGCATACTGAATGAATACTAACGATCACATACTCTGTCTACCCTCTTCCACGTGCACTGCGTATTTGTGAATCAGCCGCATTAAAATCACGTCAGTATGCATTTGGTTTCCAGGACAAAATGTTAAGTGTTAAACCTGGTTTAAAGAACaatcttaattttaataaacagaacattaaaagagaaacaaaatgcagactgcttaattataataatattctaaacattactgtatatataaatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116068 lncRNA upstream 393131 22878078 ~ 22878468 (+) True G93039
TU116054 lncRNA upstream 493496 22777728 ~ 22778103 (+) True G93027
TU115956 lncRNA upstream 1039707 22231457 ~ 22231892 (+) True G92956
TU115954 lncRNA upstream 1050820 22220524 ~ 22220779 (+) True G92954
TU115952 lncRNA upstream 1119019 22152321 ~ 22152580 (+) True G92952
TU116134 lncRNA downstream 25445 23301615 ~ 23328984 (+) True AMCG00017783
TU116140 lncRNA downstream 44281 23320451 ~ 23321055 (+) False G93100
TU116141 lncRNA downstream 44281 23320451 ~ 23321055 (+) False G93100
TU116142 lncRNA downstream 44281 23320451 ~ 23321055 (+) True G93100
TU116143 lncRNA downstream 54320 23330490 ~ 23330720 (+) True G93101
AMCG00017775 mRNA upstream 21752 23227857 ~ 23249847 (+) True AMCG00017775
AMCG00017778 mRNA upstream 56239 23213411 ~ 23215360 (+) True AMCG00017778
AMCG00017779 mRNA upstream 103254 23166347 ~ 23168345 (+) True AMCG00017779
AMCG00017773 mRNA upstream 118819 23143472 ~ 23152780 (+) True AMCG00017773
AMCG00017774 mRNA upstream 142142 23101962 ~ 23129457 (+) True AMCG00017774
AMCG00017771 mRNA downstream 3579 23279749 ~ 23289355 (+) True AMCG00017771
AMCG00017786 mRNA downstream 19323 23295493 ~ 23296647 (+) True AMCG00017786
AMCG00017783 mRNA downstream 49484 23325654 ~ 23329569 (+) False AMCG00017783
AMCG00017785 mRNA downstream 72188 23348358 ~ 23352278 (+) True AMCG00017785
AMCG00017784 mRNA downstream 163576 23439746 ~ 23443917 (+) True AMCG00017784
TU115792 other upstream 2449652 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2456053 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3743306 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 3847920 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 3859609 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1429209 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5366560 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6157242 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 9131259 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9185128 32461298 ~ 32465063 (+) True G94838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU250431 False 555 TUCP 0.52 2 NC_035917.1 15377367 ~ 15380444 (-)