RNA id: AMCG00017775


Basic Information

Item Value
RNA id AMCG00017775
length 943
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00017775
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23227857 ~ 23249847 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGCATCGCGCTGCCAGGGGCTGTGGGACGCTGTGGCCTCATCACAGACATGGTAACAGTTTCTCTTTCGCACTGGAGCAGTCTGGAGACCCgggcactggactggactgcatgTGGGACTTTTATCTTCACGGACTAACAGCTTGATCTGAAACGAGCAGTTTTGATCTGCTGGTTACTATCACCAGTCAGTCGTTGATGCTGACTAATCGAAGATCCAAGTGCTCTTCATTTCTGCACCATCTTTGCTTATTGGTTACTCACTAACCCAACAGCTGGATCCGCCACAGAAAACACATCCCGCAGAAACCAGAGACAGTTCATCCTTTTCCACAATGAACAGCAACAAACCTGAAAAGGAGATCGAGCCCAATGAATCTAATAACTACGAAGAAGAGGTCCGAACACTGTTTGTTAGTGGACTGCCATTGGATATCAAGCCCAGAGAACTTTATCTTTTATTCAGACCATTTAAGGGTTATGAAGGTTCCCTAATTAAACTCACCTCCAAACAGCCTGTAGGGTTTGTCAGTTTCGACAGCCGGTCAGAAGCTGAGGTGGCTAAGAATGCTCTGAATGGTATCCGCTTCGACCCAGAGATTCCTCAGACACTGAGACTGGAGTTCGCCAAAGCCAACACCAAGATGGCCAAAAGCAAACTGGTGGGAACCCCCAACCCCTCTCAGCAAAGTCCTGGACCCCAGTTCATCACTAGAGAACCCTATGAGCTCACAGTACCTGCACTTTATCCCAGCAGCCCCGATGTCTGGGCTCCCTATCCTCTGTATCCCGCGGAGTTGTCACCTGCTCTACCTCCTCCTGCTTTCACCTTCCCCTCTTCACTGCATGCTCAGGTAATCTCCCTGAGCGCAACCAGCCTCACCAACCCTCCCACCAGCCCTTTTCCCTTCATGGCCCCACAGTGCACTCCATTCAACTAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25091 RBPMS; RNA-binding protein with multiple splicing

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116068 lncRNA upstream 349389 22878078 ~ 22878468 (+) True G93039
TU116054 lncRNA upstream 449754 22777728 ~ 22778103 (+) True G93027
TU115956 lncRNA upstream 995965 22231457 ~ 22231892 (+) True G92956
TU115954 lncRNA upstream 1007078 22220524 ~ 22220779 (+) True G92954
TU115952 lncRNA upstream 1075277 22152321 ~ 22152580 (+) True G92952
TU116134 lncRNA downstream 51768 23301615 ~ 23328984 (+) True AMCG00017783
TU116140 lncRNA downstream 70604 23320451 ~ 23321055 (+) False G93100
TU116141 lncRNA downstream 70604 23320451 ~ 23321055 (+) False G93100
TU116142 lncRNA downstream 70604 23320451 ~ 23321055 (+) True G93100
TU116143 lncRNA downstream 80643 23330490 ~ 23330720 (+) True G93101
AMCG00017778 mRNA upstream 12497 23213411 ~ 23215360 (+) True AMCG00017778
AMCG00017779 mRNA upstream 59512 23166347 ~ 23168345 (+) True AMCG00017779
AMCG00017773 mRNA upstream 75077 23143472 ~ 23152780 (+) True AMCG00017773
AMCG00017774 mRNA upstream 98400 23101962 ~ 23129457 (+) True AMCG00017774
AMCG00017772 mRNA upstream 207394 23007023 ~ 23020463 (+) True AMCG00017772
AMCG00017770 mRNA downstream 21752 23271599 ~ 23276170 (+) True AMCG00017770
AMCG00017771 mRNA downstream 29902 23279749 ~ 23289355 (+) True AMCG00017771
AMCG00017786 mRNA downstream 45646 23295493 ~ 23296647 (+) True AMCG00017786
AMCG00017783 mRNA downstream 75807 23325654 ~ 23329569 (+) False AMCG00017783
AMCG00017785 mRNA downstream 98511 23348358 ~ 23352278 (+) True AMCG00017785
TU115792 other upstream 2405910 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2412311 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3699564 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 3804178 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 3815867 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1455532 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5392883 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6183565 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 9157582 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9211451 32461298 ~ 32465063 (+) True G94838

Expression Profile