RNA id: AMCG00017776


Basic Information

Item Value
RNA id AMCG00017776
length 2232
RNA type mRNA
GC content 0.39
exon number 10
gene id AMCG00017776
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23169573 ~ 23194544 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agGTGCATCCATCCTCGACTGTTCTTGAACTTAAAAATAGGTTTCATAAAGCATGTCCCCAGTGGTATCCTTCCCGAACTGGCCTCAGGGTTGAACGCAATGGGCTTTTCCTCAGAGATTCATGTGTTATCCAGACCATTGCTTCATCATCTCTTGTTACGTTATACTCCACAGACTTGGGCCGGCAGGTCAGCTGGAGTGCAGTATTTCTAACCCAGTATTTTGGACCTCTCTTAATCTACCTGATGTTTTATTTCCGATTATCAAGTATATATGATGACACTATTGAGAACCATCGCCACCTGGTAGTGCACTTGGCATGCTTCTGCCACTCCCTCCACTATGCCAAACACCTCCTGGAGACACTCTTTGTTCACAAATTCTCAGAAGGATACACCCCTTTACAGAACCTGTTGAAGGGTTGCACCTTCTACTGGGGATTCACAACCTGGCTGGGTTATTATGTAAATCACCCTCTGTATACACCTCCATGTAGttttgtgAAGCTGGAAATTGTTGTATCAACTTTGCTTTTGCCCAACACAATCAGTCCGGAAACAGATCACATTTTCCAGGACCTACCTACAATCCCTTTACATGGCTCTTCAAGCTGGTCTACTGTCCCCATTATACATATGAGATTGGAGCTTGGATTAGTTTATCCATTATGACTCAAACTGTTCCTGttgcaGTGTTTGGTGTGATGGTAACCATTCAGATGTTACTGTGGGCGAAGAAGAAACATCATAAGTACCTGAAACTGATGAAGAACAGCGCATATCAGAGGGCGGCTGTAGTTCCTTTCATATTGTAGACACTGGTGCCCGGGCAGTGTCATGATGTAATAACAGGAAATAATGCATGAGCAGGCTGAAAACAGAAGCATAGGCTGTAATTCAAAATGCATAGCATTTTAATCATCTGATTTTATTCCGATAAAGAGCACACAAGTATAGCGCTAGGAATTAAAATGATGCAGGTTTTGAACTTTAGAGGTTACACTGATAGCTGTTGACAAGGCATTAGGACAAATCTAGGTAAACTGGCAGTAAACTAGTGAGTCAGTGCCTCTGGAAGAGTGTGAGAGATAGAGGATCCACATTGGGCTTGAAAAATGAGACTCccgaaacatttgttttcctcttcccTGTTTCAAGAGGTGCATGTGGAAATAAACTACCTGATGTACAGCACTCTAATGCTGTCATTCAAATAAATGGTTAatcaaaaaaacagcaaaaaaacaatgtgGGCATGAGTTTCAGGTATTGTTGAAAGACTTTCATAACACCATATATCTTTGGCATCTAAAgttgatttcatatttaatttaattctggtTCCAGTCTAAGAAATAACATACTTAAGTTTCTACTGGGAacactactacttctactactgctactactactactacaaataaaaatcctGCAGGAGAACAGTGCACTgtttgttgtcacatgcacactaataataatatttgattttttaacTTGCAATCACATTTCACAGTAGACTGGTGATGTGAAAATACTGCATGAGTGAACAAGACACAGGCAGAAGTAAAATCTAAGACGCAAAAGAAAAGAATACCTGCCTCTGTCAAGCCCTTTCTCCTGGGAGCACTGCGGAACTGGAATGCAGCTGTACAATTTTCAACTGGACAAAAGGTGTTACTGCTGAACTAGCAAGAAGAATCAGTGAATTGTTATAGTCAAATTTTCTAATTAAAGTCATACTCACATCAAGaacttttcaaatgtttaataatctATGAGCTAAGTGCAATGTTCTCtataaatacagttaatatgTTTTTGCTATGAACAGGTTTACAGTGTCAGAATAAATATACAGCTTTGCTTGGATTaggaaacacatttgttttgcacattctTTCAGAGCCTATCAGGCCAGGACTGTTCATCTAAGCCACACAGCATGCATATATTTCTTCACATTCAGTCATGAGGGGTAGTATAGCAAAGCAATTTTGGTCATAATATAGAATGGTTAATGAGGACACATTACATTATGAAACAATTaattcaacaaaaaacaaaattgtataaTCTACTCTTATAAGGTATCTTATGAATCTGCCTGTTtcatttttgaatatatattgtaatgatgCATGCAACAGCAACACACATTAACTCTTCACCAAAGAGCTCAGACCACTGGCATGGAGGTGCCTTCAGGCTATATGCTCCTTGAACCCACTCcaag

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116067 lncRNA downstream 330139 22839151 ~ 22839434 (-) True G93038
TU116062 lncRNA downstream 365189 22801371 ~ 22804384 (-) True G93033
TU116057 lncRNA downstream 391474 22777804 ~ 22778099 (-) True G93028
TU116052 lncRNA downstream 478041 22690675 ~ 22691532 (-) True G93026
TU116050 lncRNA downstream 479896 22686424 ~ 22689677 (-) True G93024
TU116128 lncRNA upstream 95788 23290332 ~ 23290681 (-) True G93090
TU116130 lncRNA upstream 100275 23294819 ~ 23295369 (-) True G93092
TU116205 lncRNA upstream 101256 23295800 ~ 23296246 (-) True G93159
TU116222 lncRNA upstream 131981 23326525 ~ 23329744 (-) True G93165
TU116235 lncRNA upstream 249667 23444211 ~ 23540120 (-) True G93173
AMCG00017763 mRNA downstream 803526 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1766313 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 1800084 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017759 mRNA downstream 1865450 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017753 mRNA downstream 2033013 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017777 mRNA upstream 69490 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017782 mRNA upstream 102144 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 123549 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 136400 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017787 mRNA upstream 161062 23355606 ~ 23388495 (-) True AMCG00017787
TU115494 other downstream 3750217 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3750217 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4706397 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5695234 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 7138668 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 123582 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 123582 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 123582 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 2818117 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2818117 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile