RNA id: AMCG00017778



Basic Information


Item Value
RNA id AMCG00017778
length 396
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00017778
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23213411 ~ 23215360 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAAGGACAGTGGTCCACCCCAAGGCTCGCATTTTGGCAGATGCAGGGCCCATCATTATTGGGGAAGGCAACCTGATTGAAGAGCAGGCCCTGATTAGAAATGCCTTTCCTGAAAATATGACGCCTGACTCAGAAGGTGTGGAGCCCAAGACGATGACAATTGGAACAAACAATGTCTTTGAAGTCGGATGCAAATCACAGGCTTTGAAAATTGGGGATAACAATGTCATAGAGTCCAAAGAGAACACGGTCATCTATGGCTCCGGATGTATGCGGCGCGTGCAGACAGAGAGACCACAGCCTCAAACACTCCAGCTCGATTTCCTAATGAAGATCCTCCCAAATTACCATCATCTGAAGAAGACTGTCAAAGGAAACGCCACTCctgcaaaaaac

Function


GO: NA

KEGG:

id description
K10428 DCTN6; dynactin 6

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU116068 lncRNA upstream 334943 22878078 ~ 22878468 (+) True G93039
TU116054 lncRNA upstream 435308 22777728 ~ 22778103 (+) True G93027
TU115956 lncRNA upstream 981519 22231457 ~ 22231892 (+) True G92956
TU115954 lncRNA upstream 992632 22220524 ~ 22220779 (+) True G92954
TU115952 lncRNA upstream 1060831 22152321 ~ 22152580 (+) True G92952
TU116134 lncRNA downstream 86255 23301615 ~ 23328984 (+) True AMCG00017783
TU116140 lncRNA downstream 105091 23320451 ~ 23321055 (+) False G93100
TU116141 lncRNA downstream 105091 23320451 ~ 23321055 (+) False G93100
TU116142 lncRNA downstream 105091 23320451 ~ 23321055 (+) True G93100
TU116143 lncRNA downstream 115130 23330490 ~ 23330720 (+) True G93101
AMCG00017779 mRNA upstream 45066 23166347 ~ 23168345 (+) True AMCG00017779
AMCG00017773 mRNA upstream 60631 23143472 ~ 23152780 (+) True AMCG00017773
AMCG00017774 mRNA upstream 83954 23101962 ~ 23129457 (+) True AMCG00017774
AMCG00017772 mRNA upstream 192948 23007023 ~ 23020463 (+) True AMCG00017772
AMCG00017766 mRNA upstream 526089 22686558 ~ 22687322 (+) True AMCG00017766
AMCG00017775 mRNA downstream 12497 23227857 ~ 23249847 (+) True AMCG00017775
AMCG00017770 mRNA downstream 56239 23271599 ~ 23276170 (+) True AMCG00017770
AMCG00017771 mRNA downstream 64389 23279749 ~ 23289355 (+) True AMCG00017771
AMCG00017786 mRNA downstream 80133 23295493 ~ 23296647 (+) True AMCG00017786
AMCG00017783 mRNA downstream 110294 23325654 ~ 23329569 (+) False AMCG00017783
TU115792 other upstream 2391464 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2397865 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3685118 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 3789732 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 3801421 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1490019 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5427370 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6218052 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 9192069 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9245938 32461298 ~ 32465063 (+) True G94838

Expression Profile