RNA id: TU116216


Basic Information

Item Value
RNA id TU116216
length 1657
RNA type TUCP
GC content 0.39
exon number 5
gene id AMCG00017780
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23318093 ~ 23321954 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCTGGTTTCATAGAGGAAAGAGTTAAGATGCAATGTGATTATCCCAGTCTTGTGATCCAGCGTCCTGTCATGAAAGAACTCTCTTCATATACAGTGAACAGGCCTATTTCAACAAGTCGCTTGCAGTAGAACGGCAATAGTtgatttttaacaaagaaaCCTCCTGTGGACCTTCATTAAACCTGAACCTGGTGGAGATCCCCTACAGCACCATTTTCCAACACCGGGAAGTCCTGGAGGTGCTGGACCTCAGCTTCAACCTGTTGGAAGAAGTCCAGCTCTTCTGGGGGAACTGGAGAAGCTCACCACCCTGATTCTAGACTGCAACAACTACACCTCTCACGTGAAGTTTCCATACATGCCCAGTGTCACAACGGTCTGGatcaacaagaacaaaatcaaaaacctACCAATTTTTGTGGAAGAGATCAGAAGGAAATTCCCAAACGTGAAATTTCTCAGCATGATGAATAATGAGGCAGCACCAAGCTATTTTAATGGAGGGACTTTGACTCAGTATCTAGATTACAGGCAGTATGTTATCAGCCAGATCCCAGGACTGGAGGTTCTGGATGACAAGGAGATCCTAGAGGAGGAGCGCATCGAGGCCAGAAAGACCTACAAAATCCAGAAGAGAAAGGATAcactcaaaaagaaaaaggaattaaataagTAACCCCAGACAACCTctatgtttttaagtgttttttcttcttaccttgcatgtataaaaataggtattataaacaaatgtataacttccaacaaaacagaaaagggtCTGAGTAAGCTTATTACTCATCCAATATAAAGTTAAACTAAGTAACAGAGGCTCAGGTAGGAAGAATATCTTAAGATACCATGGCTATTTAGGTCTGTCCTTAGGTCTGTCCTGTCTTAATTAAATAAGCTAAAGCCCCACCTCatttattatgaaaattatGATCATATCTTATGTGTAAGTGGCTTCTGactgcaggtaacagaaatgagTGATCATGTGCTATGaggttaatatttattttaagcttaGGGAGCacagcattattccaatatttaacaatattatattgttaaaataaagcacctacatgaaaaaacacaattaatacatGCTCGAATTATAGGCAGTGGAAGATGATTgtgtaaaaacattatataaataaagacgttataaattaaacaagaagGCACAGACATTTTTCCACAATTTTCAGCTTGTTGTCTACAACCGTAACAGCAGGGGGCAGAAATGCATTGGAAACACAACAGCTTGGAGCTAAATTGGCAGTGCTTTGTCTCTTGTGAAAACAACATTGCCCATACAATGTGTACTAAGGGATTTTTTTATCAGGAATCAGGAATATTCTACACTAAGGCACAGTCTGATCTGCAGGAGACCTCGGACTGTAGCGTGATTAACATGCCATGTACACAGGTCTGACCATTATGCTTGTGCTCAGCTGGGCAGGTTTGATTGGGCCGAATGTTATGAAATGCACACTCCCTAGAAACAGCAGATTCGAGGAAACACAACTGGCAGAAGAGACCACAATTATGATGTAGGAGAGCTTCTGATATATTATGTTTCCAAggtagtttttttattttatgaattgtattaattactttgattatttaattggaGCAGGAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116205 lncRNA downstream 21880 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 22757 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 27445 23290332 ~ 23290681 (-) True G93090
TU116067 lncRNA downstream 478692 22839151 ~ 22839434 (-) True G93038
TU116062 lncRNA downstream 513742 22801371 ~ 22804384 (-) True G93033
TU116222 lncRNA upstream 4571 23326525 ~ 23329744 (-) True G93165
TU116235 lncRNA upstream 122257 23444211 ~ 23540120 (-) True G93173
TU116417 lncRNA upstream 585621 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 712742 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 722240 24044194 ~ 24046369 (-) True G93355
AMCG00017782 mRNA downstream 4667 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017777 mRNA downstream 39084 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017776 mRNA downstream 123582 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017763 mRNA downstream 952079 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1914866 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017781 mRNA upstream 8990 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017787 mRNA upstream 33652 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017789 mRNA upstream 89707 23411661 ~ 23422126 (-) True AMCG00017789
AMCG00017788 mRNA upstream 101737 23423691 ~ 23430213 (-) True AMCG00017788
AMCG00017790 mRNA upstream 123970 23445924 ~ 23457016 (-) True AMCG00017790
TU115494 other downstream 3898770 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3898770 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4854950 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5843787 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 7287221 16030456 ~ 16030905 (-) False G92129
TU116981 other upstream 2690707 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2690707 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2782072 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2787106 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4781345 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile