RNA id: AMCG00017781


Basic Information

Item Value
RNA id AMCG00017781
length 3649
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00017781
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23330944 ~ 23345917 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCTCCACTCGCACTGTTCTCGCCGGAGCGGCCAGCGAGGAGACGACCTGACACAACAGAGCAAGCCCGAAGTGGAGGGTGTGCGCCGTGCACAGCTGACATCCTTGGCTGAGCACTTGCTCGGCGCGGACGGGACGGAGACCATGAGCCACCTCAAACTGTGGAACCAGATGCAGGCGGGCAGCTCGGAGGTGGACTGGTGTGAGGGCAACTATCTCATTTACCCTGGCATTGCGGAGTTTTACAACACGATCAGcaacatattgttttttattttgccaccTATTTTAATGTGCTTGTTCCGTCAGTATGCCACACATTTCAACAGTGGGATATATCTAATATGGACTCTGCTGGTTGTAGTTGGTATCGGCTCAGTGTACTTCCATGCTACGTTGAGCTTTCTGGGGCAGATGCTGGATGAGCTGGCTATCTTGTGGGTTTTGATGTGTGCCATCGGCATGTGGTTCCCCAAGAGATACTTGCCAAAGATTTTCCGGAGAGACAGGGGGAGGTTCAAAGTCGTCATTGCCATTCTCTCTGGAGTCACTACCTGCCTTGCCTTTGTCAAGCCAGCGATTAACTCAATCTCTCTGATGACCCTTGGTATTCCATGCACTGCGCTGCTCATCACCGAGCTGAAGAGGTGTGAGAACCTGCGGGTGTTTAAGCTGGGGCTTTTGTCAGGGCTCTGGTGGACTTTAGCTCTCCTCTGCTGGATCAGCGACAGGATCTTCTGCGAGATGTGGTCCTCTTTCAACTTCCCATATTTACACTGTGCATGgcACATCCTGATCTGCTTGGCCTCTTACCTGGGCTGTGTCTGCTTTGCCTACTTTGACGCGGCCACGGAGGCTCCAGAACAGGGACCTGTCATCAGATTCTGGCCCAGTGAGAAATGGGCCTTCATTGGGGTGCCGTATGTCAGCCTGCTCTGTGCACACAAGAAGTCATCAGTGAAGGTGACATAACTGAACTACTGTGGTGCTGTGGGAGAGCGGATCACTCTGGAGCAGGGAGACGGAAGATgaagaatttatatttttatattctacAGTTTGCACAGTTACAGATTGTAGGTTGATGATCAAAAAATGTACCGGTATAAAGCTGGTGTATAGATAAATTCTTTATGAACACAGTTTGTAAAGGCTGCTTTTGTTTATGAGAAGAGGTCCTTATACTTGGGTATATATAACTTCACCAGTGAAGAATTTGCTCCCCTGTTGACATATGTGGGACCAAGGTGTGACAAATGGAGTGTAACTCTCTGTACTATACATTAGGCTCTTCCCTACCCTGCTGCAGCATAATGTAGCTTCTGTGTCCAAGTAGAATTCCTCTTGGTGGTGTTACTGGAATCCACTGTCTTTACAAACTGTTTTGCAAGTCCTTCAAATTTTTGCTGCAAagtttaacactttaaaaaatatatatttgtgtgataCCAATAGCCACACCCAGGACCTGTGCCTTGACTAACTTATTATGAAATTCCGTTACTGACATTTGATCCAAATGTTACTGTTACGTTAACAAAGGtataatttctatttttgtgaACATTCCATAGCATTCATGATATTGAGTcttccaaataaacaaactggcAAATTTTAAAGGGGAAAGTATTATATTGTCCCCTCatgaagttttatttatttgtggaaatGTTAAGATATGTCAATCATTATTAAGCTTTTGTTCTTTTGTCCATctcttacattttgtaataccTGCTTTCATATGGAAGCCTAACCAAGAGTGAGTGATTCATCATTGCATTCTGTAGCACATATTGGTCCTCAAACTGATAATAATCATTGGTAAAGTTATTGGACCCACTGTGTATTTTGTGAAAGAAATAATCTTGTAGCACTGTGACCTCTTTAACGGTaatctatataaaatattgtaatttattccaagattctgcatttttatgttttgtaacatATGCCTGGCTTTGGGTGGTGTGGTACACTCTGGATCATGTAGTTATACTGGAGTCATTGTTAGGTTCCAATGATTTTTGTGCTAAAAAAGATGTAGTTTTGGGTAACAAGTCACCACATACTTCAAGACAATAGCTGTCATATGTGGATACAAATTTATGCAAGCTTGCAGTGTCTGACAGCGTTCAAAAATAGTAATTTTGTATATCCccacaattttttatttgttacagGTCTAAATTCTACAGTGGGTTGTGGAGGCCATGGCCAATTTTTTTAAAACtatctaaaatgtaattatctcaTGATTACAGCATTATTTATCTGGTGCTCACAAAACATATCTCAGGTTCTTCATCAAATCATTACTTTGTGAACAACTgataacagaataataatatcAAGATCCTCGGATAACAATGTTGTGATCATGAGATAACAATGATCTTTTTAATAATCTTGCCATGAATTCTTGAGATATGAATACCTCCCACCACTGGCTTCACAAAACATTGAGAATTCAGCCTATAATGCATGATTAAATCTGCCACttgtacttattttattgtaactgTGTATTAGGTgagaactaaaaacaaaaaaatattatatctactttaaaaaatgcaatgttaatAATCCATTGACTTAAATGTTCCCAGAGATACATCCCCTGCAGTTCTATCAAGAAGAAAGATCTGAGGTGGTGTATGCAGTAATCTAAGTCAGTGTGATTAAGAAATGTGTAAAGATTgcactaaatgtatttattttcctaatctcatcatatacagtatttgtagCAGATTTGTagaaaaaccaaacaagaaagaaacacattataACAAAGGTAGGAAGTATCTCTTGtacttgtatttttacattttatcttaTGGGAAAACCTGGCCAATAAACCTTTTTTGGTGACGTTGTCTTCACTTTAACAATGTTTCTCAACAGTCAgtagatatgtttttaattatacagaTGACTGTGCTTGCTGCTTTTACTAAAGTTTTGTGTGCGCAGCCCCTGTCAGAATCAATAAGATAACTATGTGATTCATTCCTGGTGATGAAGTGAATCACAAACAGTCCAATGCAAGGTGTGGATTTGCAATGTTGTGATGATGTCAGACAAACAGATGATCAAACTGGCAACCAACTTCGGCAAAgcaacagtaaaaacattaataaatgcatgtacagcacataaaaatataaccaactaaatttaaaatgcattcaaagttCACTAGATTATCCCAAAAAGGTATTATGTGAGACTTGGTAGGCATTCTTGATTCTCAAACTTGATAACCAAATAGAATATAATGAATTTGTCACAGGAAGGAGTAGAGAAATGTGATCTATGATAGTATAGATTTTAGGAGACATGTTATCCAGCAAGCTGCAGAGGTCAAGGAAATCCTGTGTGGCCCAGAACATTCCTTAGAAAACTCTCCATGCCATGACCAAAGAATCTTGTTTTCCATTATGTTCCATGACACAATCTGTCATAATAACTAAAATGTTTTCTCATGACAGTAGTCCATGTTTCTTTAACTTACAAAACACAAGATTGTTATAAAGAGGATTTTCAgacaaaagtatgtgacagAGTTTGtcctattaattttgtttatctCATGACTTGAGCTTGGGTGATTGCACTGCGCTGAGCTAATGGG

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K01441 ACER1_2, ASAH3; alkaline ceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116222 lncRNA downstream 1200 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 34698 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 35575 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 40263 23290332 ~ 23290681 (-) True G93090
TU116067 lncRNA downstream 491510 22839151 ~ 22839434 (-) True G93038
TU116235 lncRNA upstream 98294 23444211 ~ 23540120 (-) True G93173
TU116417 lncRNA upstream 561658 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 688779 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 698277 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 919455 24265372 ~ 24266487 (-) False AMCG00017819
AMCG00017780 mRNA downstream 9014 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017782 mRNA downstream 17485 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017777 mRNA downstream 51902 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017776 mRNA downstream 136400 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017763 mRNA downstream 964897 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017787 mRNA upstream 9689 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017789 mRNA upstream 65744 23411661 ~ 23422126 (-) True AMCG00017789
AMCG00017788 mRNA upstream 77774 23423691 ~ 23430213 (-) True AMCG00017788
AMCG00017790 mRNA upstream 100007 23445924 ~ 23457016 (-) True AMCG00017790
AMCG00017791 mRNA upstream 113010 23458927 ~ 23464763 (-) True AMCG00017791
TU116215 other downstream 8990 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 8990 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 8990 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 3911588 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3911588 19418201 ~ 19419356 (-) True G92591
TU116981 other upstream 2666744 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2666744 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2758109 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2763143 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4757382 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile