RNA id: AMCG00017783


Basic Information

Item Value
RNA id AMCG00017783
length 2422
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00017783
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23301615 ~ 23329569 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATATAAGCGCCAGTGTGCGTCTACTGCGCATTTCACTCTCTACAGACGACAACCATGATATTGCAACTAGAGCCTGAAGCACCTCGCCGTTCACCTGCGAAGATGTCCGACTTTCACGCCGCGAAACAGCAGAAGATGCGCTTTTCTCTGGATCCGGAAGACGTGCGGGTTTTCTCGTTGAAGAAGCGGATTGTTATTGTGGAAAATACATCGCGGGTCAATAACCAGGCCACCCCGGACCCCCGCTGCAGCCGCGTCCAGGTCCAGACTGCCGGCTGAGACTCGCTCCACACCGCAGTAATGAGAGGTGGAGACAGAATGGCCCCTGACGCTGCCCATTGCTACTGCCCAGTCGCTTACCTGTGCCCATTGAAATACATGATGCCAAGTGTGGGTTTCAGTAAGGCCAGTGCCCCGCTTTCCCACGGGCCTGTGACACAGCGGCACCTCCCTGGGAACAAGTGCGAGACGGACCTTGCGGGACTGCCACTGTTCCAGGTGTTTTGGCGAGCCGTCTGCTTCCTTCTGGGAGCGTTTTCTAAAATGCTGAGCCACTGGCCCATTGCCACTGAGTCCGTTCGAACCAAAGTCCCCATGGCTGGGAAAgactcccccctcccccacactcCCTCTGGGATGACCAGTTTTTTAATGGGGTCCTGTGAAAAGCAGAGGAAAGACACTCCAGGGTGTGAAAATTGGCCCACTGTCCAGGAAATGCAGATGGTTAAGGTAGAGAGTCTTTGGGGACTGGTGTCAGGTGAGATGGAGGTGCAGGTGGAGATGTCTGACTGGTTCGAATGGGATTCAGAAGATCTGGAATCACATGGTGGTTGTGAAGATGCAGAGGCGGACAGTGATTTGGACTGCACCTGGGATGACCTCTTGGACTCTGCTCCCGATGCCAGTTTTTCCCTGGCTGGCAAAGACTCGGATTCATTCAAGGCGGTGAGCTGCTCCTCCAGGCAGAGACcattggaggaggaggaagaggaggaaatgGACGAGGAAGGTGAGACGGACTGGTCAGAGGACGAGGACTGGGAAGATGATTCAGAAGGGAGCTGTGAGGGaccacagagcagcacagagctCTGGGAACTGTTCCTGCACAGTGACGACCCCTACAACCCCTTTGCATTTGAGGCTCTGGCTGGAAAGGTGACGGAAACCAAGGATGAGCCTCCTGTGGACAAAGAAGGACCGGGGACTCCTCTGAGAAAGTCAGAGGAGGAGGACAGCTGCCCCCTGCAGGATGGGAAGAGAGCAGGCAAGAAGGTGCGATTCAGTGATAAAGTGGAAgtgtgccccctggtggtgTGGGGGTTTGCCAGCCATGCCGCTCGCAGTGGATCCTGCTGGCAGGAGATGGCCAGAGACCGGGACAGATTCCAGAGGAGAGTCCAGCAGACCAGTGACGTCATTAGCCTCTGTCTGCAGCCGGAGCACAGGGCCAGAGTGTGGGAAAGGATATGCCTTGATTCATACTGTGAAGACTGACATGCCATTATAAGCTTCAATCAAAacgtacagattttttttctgtactttatacTTTTCACTTTATTCATCCTTCTGTTATTAATGTTACTCATTTGCACGagtctttgtattttattatttttctaactaTTCTAATGCTGTGCAATAATACTGATTTCCAAACTCTGTGAAAAAGCactgaaatacaaattttattaaattctggaaaacaaagtaatataaGAAGGTTAAGTTTTATTTGAACTGACCAGGTACTTTTACTTGCTGGTGGATGTAAATATTTCCTATTACTCGGTATTTGTTGatgcacataaaataaatttataTTGACCAAGCACTGTTTGAAGGGTGCTTTTCATTTATAGGAAAGGTGTCTGTTAAAAGCAGTTGATACAAGTTCTAAAACTGTCAAGGATGTATACACTTCCAGTACTAAAACTGAATATCTTATTTACACAATCTAGGTACATTTTAGGAGTAACTAAACCAAACCGTTCGAGTGAAATGGGGTAAGGCATAGCGGGGAttggtactttttttttattttttataaccaaGCATTTAGTGCCAGAATCAATGTTCCCCACAATGTGCCCTAAAATGTGCCCTAAGCTGTCTTAATGCTGCAATATAATATTGTGGATTGGTTTTAATGTTCCATCAACTTTAAGGATTTGTTTATAaagttatttagttttataattgtaataaactCCCTTTAGTCATGTGAGCAATTGCTATGCTTAAATTattctgtaaatgtataaacacgGTGGAGGATTGATGCtgaggggaaagaaaatagTGGTTAGAAAAACGTATTAGTTTCTTGATATTAAAATCCTTTGAACTCTATGCTGTTCTTTAGAAGTCTATTGAAAAGACAATCCCAATAAAAAGGCATGTTGATACCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116140 lncRNA upstream 4599 23320451 ~ 23321055 (+) False G93100
TU116141 lncRNA upstream 4599 23320451 ~ 23321055 (+) False G93100
TU116142 lncRNA upstream 4599 23320451 ~ 23321055 (+) True G93100
TU116068 lncRNA upstream 447186 22878078 ~ 22878468 (+) True G93039
TU116054 lncRNA upstream 547551 22777728 ~ 22778103 (+) True G93027
TU116143 lncRNA downstream 921 23330490 ~ 23330720 (+) True G93101
TU116144 lncRNA downstream 1165 23330734 ~ 23330972 (+) True G93102
TU116170 lncRNA downstream 98163 23427732 ~ 23429155 (+) True G93125
TU116176 lncRNA downstream 111840 23441409 ~ 23441770 (+) True G93131
TU116284 lncRNA downstream 345681 23675250 ~ 23675551 (+) True G93207
AMCG00017786 mRNA upstream 29007 23295493 ~ 23296647 (+) True AMCG00017786
AMCG00017771 mRNA upstream 36299 23279749 ~ 23289355 (+) True AMCG00017771
AMCG00017770 mRNA upstream 49484 23271599 ~ 23276170 (+) True AMCG00017770
AMCG00017775 mRNA upstream 75807 23227857 ~ 23249847 (+) True AMCG00017775
AMCG00017778 mRNA upstream 110294 23213411 ~ 23215360 (+) True AMCG00017778
AMCG00017785 mRNA downstream 18789 23348358 ~ 23352278 (+) True AMCG00017785
AMCG00017784 mRNA downstream 110177 23439746 ~ 23443917 (+) True AMCG00017784
AMCG00017794 mRNA downstream 280669 23610238 ~ 23615963 (+) True AMCG00017794
AMCG00017793 mRNA downstream 298332 23627901 ~ 23632668 (+) True AMCG00017793
AMCG00017798 mRNA downstream 318639 23648208 ~ 23671667 (+) True AMCG00017798
TU115792 other upstream 2503707 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2510108 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3797361 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 3901975 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 3913664 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1375810 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5313161 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6103843 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 9077860 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9131729 32461298 ~ 32465063 (+) True G94838

Expression Profile