RNA id: AMCG00017789


Basic Information

Item Value
RNA id AMCG00017789
length 3682
RNA type mRNA
GC content 0.47
exon number 16
gene id AMCG00017789
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23411661 ~ 23422126 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAACACGAGTTCGATAGAGGAAGTAGTTTTACGTCAGAGCACAGATGCTGGATAAGTTCCGGGTCACTCGATTAAACCTTCTACGCATGCGGAGCTTGAAATCTTTTGGCGGTTTGAAATAGTTCATCCCGGAGAccttacaaacaaacaaacaaacaaacgaaatAACCCAACTTCCAAACCGACTGTGCGAAGACGAACAGGGGCGTTAGTAAGTTGGGAAATGAGAAGCAATAAGAACAATACGGGACTTTTCTTCTTTGCATGGATGGAGAGAAGTAAATAAGCACGATTTCAGCGCTGTCCTGGATGTGCTTTCTTTGATTAATGAGCTGGACAGGTTAATACGTCCAACTGTCGCATATTCTATGTAGACCCTTTTACGGATATATAGATCATAGAGATGTCATAGGAAAATGTCTGGCCATCGAAAACGTAATTCAAAATATCTGTGGTGGTCACTCCTTTCCCTGGGGTTTCAGCCGGGAGCCGCCGCCGCCTCGACTGGCAGAACAATTCGCCACATCAGCCTGGGAGTgCATATGTTTGACAAACCAAATAAAGACGCCTTTTACTTAGTCGCCTACTTCTTATTTGAAAAGCTAAACCCCAGCCAAGCTAAAGAAGCTTTCAGGTTTTGTTGGCCAGTTTTGGATAGAAAGACTGATGCTGAATTTCGGAAAATATCTTATGGCTGGCTCCGGGATATCTCGACTGAATGTGGGGATGCCTTTCCCAAAGTGGCGGCCTCCATATTCCTTTCTCCGGGAGGCTCCAAGTTCATTAACCTCATGCTCCACTTTGCCAAGCATGTCATGATGCAGGAGATGAAGTCTTACAAAGGAGATGGTGCATGGATACCAGAAGCAGCGGCGTCTAAAGCTCAGTCTGTGGAGACGGCACGGAGAAGATGTCAACTGGTGAAGAACAGGTTTCAGCACTCTGCTGTCAGTGAAGACTGTGTGATCCAGGAGTACCAAAAGAAAGCACAGTCACTGGTGAAATCATTAAGGGAACTAAGAGCAGATGGTGCCAAATATGATGATTTGCTGAGGCAAGAACCAGAAGGGGAACAGGAGAAGAGTCTTCGAACTGAAAAGAtcaaaaagGTTCGATTTCTGTGGTCACATCTCAGCGAAGTCCTTGCACTTCTGGAAGAAGAGAGGAAGGTTGTGGATTGTGTGGTTAAAGGAACTGTTGACCAGTACACATTGGATGGAAATGAAATCTCCTTGAAAATCCCTAGACTTTTGCTTGAACGGATAGAAAACTCTGTACAAACTTCCCATGTTGGGAATGTGTATGAGGCGGGACAGGTCAACATCCTGAAAGTGCTGCAGCTGCTGAATGAGGCTCTGAAGATCCTGCGGGAGGAGCGCTCCCAGGCTGGCGCTCACATAGTTGAGCTCGATGTGCTGCCGATGGCGGACAAGGTGACTCTCCACAAAAGGACCCTAGATGCTCTTAAACTCATGAGgaagaaaataacaatgcagGAAATCCCTGAAGTGGAAGCATCTATCCAGAAAATGGAGAGAGACTGGGAAAAGAAATGGGAAGACTACCTGTACCAGAAACCATTAACTCTGTTGATCAACAAGGATCCTGCTCTTGACCTACTCCCACCCATGTCACCTTTGTCCTTTGAACCAGCTACTGAGGCCAGCTGCAAGTCCAGTGTGTTCTCTCAGTACCCAGCCAAGCTTTCTGGGCTTTTACAAGTCGACTTACCCCAGGATGGGTTCCCAGCAAGAAGATGCATTTCCTTGGGAAGGGCTGATGGAGAGGATGTAGTCCCCAAAAGAGCCTCTGTTTTCTACCTGTCCTGCAGCTCTGTGATATCCGCAAGACTCCCAACACCTTGCAGAGCTGCATCACCAAGCCCTGCAAAGACAAGCTTTAAGAGAACTCCTACAGCTGTGAGAAACGTGCATCCAAAAGCGGCTGGCCGGACGAAAACCACAACTATTCTACAGAAGGAATGTGACAATCTGGCAGACCagTTTGCTGAAGCGGTCACCAGAAGCCCTTCGGAGTGTGGGATTAGGGGGCTGGggctggaggagctgctgaaCACGCTGTCCGACCCCTTCTCCACACGGAAACAGCTGCCCCGCACGCCAGAAAGCTTGATTTCAGATGTGAAAAGTTCCTGGAGGCGAGCAGTTGAGGAAGGGGAGGCAGAAAAGAGGGGACTGTTGGGAACATTTTCAGATGGGAATGGAAGTCCACTCCTCACACTGTCGGATGTCAAGGAGCCCGTTCCAAGCCCTCTTGTATCTTTCCTAAGCAAACCACTACTTCAGGCTGAAAATGCTGCTGCAGAAAGCCTGAAGGCTGGGAATTTGAGTAGGCCATCTGTGAGGCGAGAGAGGGAATCTTTGCACTCCACGCTGTCCTGGAACTCGACGCGGCTTGTCGGGTTAGACAGTCGGGACAACAGTGGTGTTGTGCAGTTTAGCATTGCTAACGAAACCATGCCAGAGATGCTTGGTGATGAAAGTCTCCAGAGTTTCAGTGATGTAGAGTGTAGAGACCAAGAGTCGAGCAGTGCtgtggagaaggaggaggaggaggaggaggaggaggaagtggaAGATGACCTTTTCCTCCCGAGGCTGTCCTCAGAAGCTCTGATACCAAGTATTGACCTGCGTTCTCTGCGCAGTCGATTCGATCAGATTCGAGCTGTGTACCGAGAGATGTCGTTCACAGGCTGTGACAAGGAGGTGCCGGTCGAGCTCTGCCCCTCCCCGGCTGATCTAGAGGCCTTGAAGCCTGGAAACTGTGAGGCAGCAGCCACAGTGTTCTCCCTCGACCTGGACTCCTTGGAAAGCCCATCGGCCACCAGCAGAGAGGAGCGCTGGAGCCTCCCCCCGCTGGTGACCTTCTCGCCCATGGATGATCTTCAGAGTGGATTAAGAGAGGGGGTAGAGAAGATTGAACTCTGATTTTGGGatagcacttttttttttaatagaagaTAATGTCCCTTTTTTATGAAGCTCTGTTGCTGTGTAAGTGTAATTGAGATGTGTAGAGTACTTGCTATGCCTTAATACATCTAATCAGTGCATTTAGgaatatttgaatgcataagtaaaaATACAAAGGCAATGTCTTCAGCTTCTTGAATGGTCTAACTTTTAACCCAAGAGTATTTTTCTACCTGTATTTTAGGGCTCAGCCCAACTCTTGAGCTTTATAAGGCATTTAGAGAACACAATTAACTGCTTAGCTAATGCAATTTCACATCTCTCCTGACTAAGTTGCTTAGATtttcactgaaatgtaattgatcCCTTACATTTGTAAGTTATTGTACTAGGACCTACCACTGGGATGCAGTGTACATGATTTGTAAATATACTggtaaaataaaacctgttgaaTTGCAATGTATGCAGTTTCAAGGTTTATTAGCAAGCATGTCTGAAAGCAGCCCCAAATCTGTAACCAGTCTTCACaacctttttttctgttaataaatCTGTTGACAAGTATATTGCAGAAGGACATGAGGTAGACTGTCTTGTAACCTGTATTGTACAGTACATGGTATCATTTGCTATGTATTGTCCTTGAAATGGACACAAGGTGGTGCTGGTGTGCAAGATTCCAGTTACATAGCTTGCTGGATGCTGTAGGCaaaatgaagtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K16589 HAUS6; HAUS augmin-like complex subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116222 lncRNA downstream 81917 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 115415 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 116292 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 120980 23290332 ~ 23290681 (-) True G93090
TU116067 lncRNA downstream 572227 22839151 ~ 22839434 (-) True G93038
TU116235 lncRNA upstream 22085 23444211 ~ 23540120 (-) True G93173
TU116417 lncRNA upstream 485449 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 612570 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 622068 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 843246 24265372 ~ 24266487 (-) False AMCG00017819
AMCG00017787 mRNA downstream 23166 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017781 mRNA downstream 65744 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017780 mRNA downstream 89731 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017782 mRNA downstream 98202 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017777 mRNA downstream 132619 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017788 mRNA upstream 1565 23423691 ~ 23430213 (-) True AMCG00017788
AMCG00017790 mRNA upstream 23798 23445924 ~ 23457016 (-) True AMCG00017790
AMCG00017791 mRNA upstream 36801 23458927 ~ 23464763 (-) True AMCG00017791
AMCG00017792 mRNA upstream 46713 23468839 ~ 23519026 (-) True AMCG00017792
AMCG00017795 mRNA upstream 195554 23617680 ~ 23627418 (-) True AMCG00017795
TU116215 other downstream 89707 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 89707 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 89707 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 3992305 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 2590535 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2590535 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2681900 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2686934 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4681173 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile