RNA id: AMCG00017793


Basic Information

Item Value
RNA id AMCG00017793
length 1800
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00017793
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23627901 ~ 23632668 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAACTGTAAATCACAAAAATCAGGGGTTTCTAGAGGACAGCAGTTATCATCTAGAGTTCGTtgcaaatgtgaacatttttacTTCACAGCCACTGACCGGGTCGGAGTTTTTGGGTAATGGGGAGTGACCCCCGGAGTCAGCTCCACTACTGCTACACGCGTTAAGTCAGTGTGTAATTGCCTCGGTAATGTTTGTCCCTCTTAGGACGCCGTCGCAATCTTCCTTCTGCGAATGGTTGCAATATTTTCAAGAGAAATATAAGCAGAGAGAAAATGCGTCTTTGCTGGCTTGTAAGAAAGGATGGATGCCACAAGCCGATCAGACTGCCTCATCTTCAAGCAGTGGTGCTAGGCCGGGGACCGGAGACTACAATAGTGGATAAGAAATGTTCCAGGGAACAAGTTCTTCTCAAAGCAGATTACAATAAAGGACACATCAGTGTGAAGCagCTTGGTGTGAATCCCACCAGTGTGGACTCGGTGGATGTGGGCAAAGGAAATGAATTGAAGCTGAAGCCGGGGCAGGTATTGCACATTGTTAACCACCTGTATCCTTATACTGTGGAGTTCACTGAGGGGGGATCAGACTCTGCAGCATCCCCCTTACAGAAAGAGAAGGCAAGCTCAAAAAGGCCACATGAGTCTGGACTAGAGAAAGGAGCCTCAGCCAGCAAAACCCCCAGCCAAAAACACCCCAGGTCAGAACCAGATCTGGGCAAGAACAAGGGAAATGGCTCCTCACCTGCCACCATTACAGCTGCCCCTGACAAGAAGGAGATTCAGGGACATTGGAGTCAAGGACTAAAAGTCACCATGCAAGATGCCAAAATGCAGGTGTACAAAGATGAGACGGTTGTTGTCATCAAGGATAAATACCCGAAGTCTAGGTATCACTGGCTAGTTCTCCCCTGGGAGCCCATCTCCAGCCTGAAAGCCCTGCGCAGAGAGCACACCCCCCTGCTCACCCACATGCAGACTGTGGCCGAGGGCATGGTGCGGGACTGCCCAGATTCGGGTCATCTGCAGTTTCGCCTGGGATACCACGCCATCCCCAGTATGAGCCACATTCACCTCCATGTCATTAGCCAGGATTTTGATTCACCCtgtatgaaaaacaagaaacactgGAATTCCTTTACAACTGACTATTTTCTTGAATCGGGAGATGTCATTGAAATGttggagagagatggaaaagTATCAGTGAAGGATGGGACCAATGAGCTCCTGAAACTGCCACTCCGCTGCCATGTCTGCAGAAAAGAAGTAGCCACAATCCCTAAACTCAAAGAACACTTGACAATCCACATGCCCAGGTGAGGGCATGAAAGTTTTGTAACAATGGAGAGAACACTTCACATGATGACTGCTGAGGTGGATGTGGGGAGGCACAGTTGCTAAAGATTGTGTTGAATTACCGTGACAGTGTGCCAGGCAGACAGGGAATGGCCTTGCCAGATATAGGTTGCTACTTTAATCCTATAACCATGGGACCCAGTAGGAAttattcaaaaagaaaaatcaattcCTGCAGTAAACCTTTACTGAGTACGTCAGAAACCTGTACTAGAATGTTTAACTTTGATTTGACAagcattatttaatattttcgtcagtgttttatatattaaatacatggaAGAGAACTGTTGTGCTGTTTCTTATTGCACTGTAATCTGTTTCTCATAGTAGCATTATTTTGTTCCCCATGCTGTAATCACCATTTTTCCAAGACTAATATAATAAgcaataatttcaataaaaagaaatcatattCAAAAGGATTTTCCTTGTTGAT

Function

GO: NA

KEGG:

id description
K10863 APTX; aprataxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116176 lncRNA upstream 186131 23441409 ~ 23441770 (+) True G93131
TU116170 lncRNA upstream 198746 23427732 ~ 23429155 (+) True G93125
TU116144 lncRNA upstream 296929 23330734 ~ 23330972 (+) True G93102
TU116143 lncRNA upstream 297181 23330490 ~ 23330720 (+) True G93101
TU116142 lncRNA upstream 306846 23320451 ~ 23321055 (+) True G93100
TU116284 lncRNA downstream 42582 23675250 ~ 23675551 (+) True G93207
TU116285 lncRNA downstream 44132 23676800 ~ 23677092 (+) True G93208
TU116309 lncRNA downstream 127072 23759740 ~ 23765482 (+) False G93231
TU116310 lncRNA downstream 127072 23759740 ~ 23765482 (+) False G93231
TU116313 lncRNA downstream 127072 23759740 ~ 23765482 (+) False G93231
AMCG00017794 mRNA upstream 11938 23610238 ~ 23615963 (+) True AMCG00017794
AMCG00017784 mRNA upstream 183984 23439746 ~ 23443917 (+) True AMCG00017784
AMCG00017785 mRNA upstream 275623 23348358 ~ 23352278 (+) True AMCG00017785
AMCG00017783 mRNA upstream 298332 23325654 ~ 23329569 (+) False AMCG00017783
AMCG00017786 mRNA upstream 331254 23295493 ~ 23296647 (+) True AMCG00017786
AMCG00017798 mRNA downstream 15540 23648208 ~ 23671667 (+) True AMCG00017798
AMCG00017803 mRNA downstream 81275 23713943 ~ 23748256 (+) True AMCG00017803
AMCG00017800 mRNA downstream 134703 23767371 ~ 23770666 (+) True AMCG00017800
AMCG00017801 mRNA downstream 149200 23781868 ~ 23793676 (+) True AMCG00017801
AMCG00017802 mRNA downstream 163131 23795799 ~ 23799246 (+) True AMCG00017802
TU115792 other upstream 2805954 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2812355 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 4099608 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 4204222 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 4215911 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1072711 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5010062 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 5800744 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 8774761 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 8828630 32461298 ~ 32465063 (+) True G94838

Expression Profile