RNA id: AMCG00017795


Basic Information

Item Value
RNA id AMCG00017795
length 3179
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00017795
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23617680 ~ 23627418 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCACATGTGCTTCTCCCAGCCAGAGCTCCACGTGTTATGGGCGGGGTTTGGGCGTGTACGTCATCGAGCTCAATGACACCATATCCGGCCGCCAGCGGAAGCGGACTGGAGGAAGGTTCTGGAAGTCTGTCGCCGGGGACGAGCGCCGTTTCAAGTTTGTACTAGTCTCCCTGCCTCGCCTAGCGGCCCCGCGTCACCCAGCCGCGGAAGGGGCGGGGGCAGCGATGGTGAAAGAAACTGGATATTATGACGTGCTCGGCGTCAAACCTAATGCCAGTGCGGATGAGCTGAAGAAAGCCTATAGGAAACTGGCTCTGAAGTATCACCCAGACAAGAATCCAAATGAAGGGGAAAAGTTTAAACAGATTTCCCAGGCATATGAAGTGCTTTCTGATTCCAAAAAGAGAGAGCTGTATGACCGAGGAGGCGAGCAGGCTATTAAAGAAGGAGGTACAGGAGGAGGTGGTGGGTTCGGTTCACCAATGGACATCTTTGACATGTTCTTCGGTGGAGGTGGAAGAATGCACAGGGAGAGGAGAGGTAAAAATGTGGTTCATCAGCTTTCTGTAACTCTGGAAGACCTATATAATGGGGCCACAAGAAAACTTGCAGTGCAGAAGAATGTCATTTGTGAAAGATGTGAAGGCCGCGGAGGACGGAAGGGAGCGGTGGAGTGTTGTCTCACGTGCCGCGGCTCTGGGATGCAGGTGAGGCTGCACCAGATCGGGCCGGGAATGGTGCAGCAGATCTCCTCGGTGTGCATGGCCTGCCATGGCCAGGGGCAGCGCATAAACCACAAAGACAAGTGCAAAACCTGCAATGGGAGGAAGATCATGCGGCAAAAGAAGATCCTGGAAGTTCACATTGATAAAGGCTTAGACCTGGAGTTTCCAGAGGGCTGTGGGAGGgTGAACTTCCCAGAAGAGAACTTCCTTTCCCAGGACAAACTGAAGCTGCTGGAGGGCTATTTGCCTAAAAGGAAAGAGATTGATGACACAGAAAACATGGACGATCTCTATATCTATGCAGATCTGGAGGAATGTGACCTGTCGCAGGAGAGACGGCACTTTGAGGAGTACGATGATGACGAGGATTACCATTCCCGAGGAGGCGTGCAGTGTCAGACCTCTTAGAGAACTTGCCAAGAGCGTCCTTGTAGAGGACTTGATCTCCGGACAGCTTACACAATTCAGTGTCAGAGAGTGTAGacaagatttttattttaaaccatggCACAGATGTGCAGATTTGGCCTTTTTTTGTTAAAGGAAATTCCCAAGCCGTTCAGTGCTagaaacaagttttaaaaagcTTGGCGATTTTTCACCAcatttagttaaaaataattacatttcattgagAAGACCGGTCAGTCCACTCAGTTGTGAAGGAAGTCCTTATCTTGTCCTTGTGAATTCCTGTCCCTGTTTCTGAGCCTCTGTTGAAAGTTGAAAGATTTGAATTGTAGGTCTGTGAGTGTTATTACAGGTTGGCCTAGCAAGGCACCGGAGACGCACCACATTGCTTTTGAATAATTAGGGATTTATTTGTGAGATTGTGGGTCCTTGTCCTGCACACAGGCTGTATGTGTTGGCTGAAATAGGAACAGCAGGGTCAGGATGAAGGAAAGAACGGCTTCTCCAGCTGCAGTGACCTCTTAATGCCAGACTAAATTTAAAGCAGAGATTCATACAAGGTTTAATAAACCTATTGTTTGcttaaaatatacacatctTCACACATTCCTTTCTAAAGGATGAGCCCACATGCAGATGGAGAATGATTCAAAATGTAGGATTGAGTATTTGTGCATTTACTGAAAGTAGGCCTGAGTTTTTCATTATGCTCTAAGGACACTggcacagttttattttttcagttttatatctACATTTGTTAAGTAATCCTCCAACATTTAGTAACAATTTAGCAAACTAACTTTGTCCCAAATTATTTGTACTTAGGTTAAATTGGTGCCAAATTTGTGCCATACCAAGGAAAGAGCagctttttattaatattaatggtaATTTAACTACagtcattcaaataaatgtccTTATAGAATGGCATAATAAAGAGATGTGTGCTAAGGCGTTGGGGTTTAAAGCTGCTGCTTTaggtaatttgtaatttaatctgtattttaatgcacaTACAAAAAATTCTAGGCATTCTAGGAAGAGCCTTCTAAAAAGATGTTCTAGAAAGATTTAAGGGGAGGCAAAAACATTGGAGATGGATCAAGTTCATGCTTCtccaaaacactgaaataatgaaaacacttGGACCCACATAGTTTACATTCTTGAGCTGTCAACTGATGGGGTTTTCTGTGGGTTTACTTGTTGATTAGTTTTAGGACTTGCTTAATCATTTTAAGTGTGCTTTATACATCTTCATAAATTCAGAATTCAGTGCCCtgcattttgatttttgttttccttcttaaaataaaaaaaagagaaatccaGCAACACATCCATATGAAGTGGATGGGTCTGATGTAACAGCTCATGTTAAGGTTCTTGGACAAGTGCAAGATGCTTTTAACACTTCAGACTGGAATATTCTTATTTCAAGATCAAATGGAAATAAGCACTTCTGTGCTGCAAATAATGTTTACTTAAATATCTGGGCCGGTTGTACTAGGACCaattattactgtttttgtacatatttatatttacagttaaGCACAATAATTTATTCCCCAAGTCTTTAatttcacacactgcacagtgattattaaaatgtgtacaagTGCAATGGTAGACATCATGAACAgaatttcagaaaaaacaagACTGCTGTAATTTCATAGTGCTTGATATGTATTCCTGTAATGTGtgttaagaaaattaaaatcttcCTTTTACCTAGCTTCATATAATTGCCATTGGCTATTTCTTAAAGCATTGAAACACTGATGACTGACTGATGAGGATAGGAACGGGGCTTTAAAAgtggaagttttttttaaatcacattagaAGCCCAATCTACATCCTCGTCTCCTTTCCCCCTGGCGTAGGGCTGAACCAGTATTCTTGGGGCACTAGACTTGGGAACCTAATGATCATGGGTCTATCATGTCCCAAATAATTACATGGATTTTGGAAGTGATGGTCTCATTTGACAACACAAGAATATggatacttttattttaataagc

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116235 lncRNA downstream 77560 23444211 ~ 23540120 (-) True G93173
TU116222 lncRNA downstream 287936 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 321434 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 322311 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 326999 23290332 ~ 23290681 (-) True G93090
TU116417 lncRNA upstream 280157 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 407278 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 416776 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 637954 24265372 ~ 24266487 (-) False AMCG00017819
TU116522 lncRNA upstream 674002 24301420 ~ 24301980 (-) True G93399
AMCG00017792 mRNA downstream 98654 23468839 ~ 23519026 (-) True AMCG00017792
AMCG00017791 mRNA downstream 152917 23458927 ~ 23464763 (-) True AMCG00017791
AMCG00017790 mRNA downstream 160664 23445924 ~ 23457016 (-) True AMCG00017790
AMCG00017788 mRNA downstream 187467 23423691 ~ 23430213 (-) True AMCG00017788
AMCG00017789 mRNA downstream 195554 23411661 ~ 23422126 (-) True AMCG00017789
AMCG00017796 mRNA upstream 6037 23633455 ~ 23646547 (-) True AMCG00017796
AMCG00017807 mRNA upstream 44226 23671644 ~ 23690436 (-) True AMCG00017807
AMCG00017805 mRNA upstream 122953 23750371 ~ 23760237 (-) True AMCG00017805
AMCG00017808 mRNA upstream 168495 23795913 ~ 23812448 (-) True AMCG00017808
AMCG00017806 mRNA upstream 194316 23821734 ~ 23840163 (-) True AMCG00017806
TU116215 other downstream 295726 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 295726 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 295726 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4198324 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 2385243 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2385243 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2476608 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2481642 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4475881 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile