RNA id: AMCG00017798


Basic Information

Item Value
RNA id AMCG00017798
length 8047
RNA type mRNA
GC content 0.44
exon number 14
gene id AMCG00017798
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23648208 ~ 23671667 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGCTAAAGAGGAGGCTATTTACCTCTAGACACCATGCGACGACAACAAGGAAGTTTCCAAGAAGGCGATTCAGtcTGCAAGCTATGATGGATGAAGAACGAGCTGGAAATGCCAAATGTGCCGTATCCAAACTACCCCAGCCAGACTCACTCACAAATAGTATCCCCATGGACAAGGATGTGGGAGAGGGCAAGGAGAATGGCCTGTATTCCCCTACAGAGGGTCAGGGTAATGGGAATGGCCCAGAGGCCGCCAGTGCGCTGAATGAAGATGAGGCTCCCTCCACTAAACTCTGTGGATATCTGCACAAGCTTGGGGGCCCCTTAAAGACCTGGAAGTCTCGTTGGTTCACGTACGAGGAGATGAAGTGCCAGCTGTACTACTACAGGACACCGCAGGATGTAACCCCTCTGGGAAGCATAGAGCTGATAAAAGCCACCTTTGGGTACCCGACCCAGGGGGACGAAGGCACTTTCCACATCCAAATCCCAGAAAGACTTTTTGTTCTCAAGGCTTTAAACCGTGAGACCATGATGTACTGGCTGCAGCAGCTACAGCTGAAGCGATGGCAGCACAGCTCCAGTCTGATCAGGGTGCCAGCTCAGCCAAGTGCAGCCCCAGGACTGGACACAGCTCAGACTGTCCTGCGCAGCACTGCAGGAAATGCCGATGTCTTCCTGCCAACCGTAAAGACTCCCACAGGCCTCGTGGGAGAGGAGGCAGCCGCCCTGCCAGCCCCATGGCAGCAACTAACCCTGCAGAATATTTCTCTCAAGCACCCTCTGACGGAGCTGCAGAACTCGGTGCACAATATTTGCAACAGCCGCTCATTCCAGGAGTACAGCCACAGTGCCAGCCACGCTGAAGAGCCCCCCAGTGAGGATGCCCTCTCCCCAAGCATCAAGAACACTGCAGCCCTGCCAGCACCCCCGGAGAACCCCCCGCCCCCAGCCCCGGTGCAGCTGACTGAGCCGGAGCAGGAGCCCCATCAGGGGGGCCGGCGGTCACCGTGCAGCCTCTCCTGGAGGAGGGAAAAGAAGATTAGCACCTCTGCAACGCTGCCTGTAGACCGGAAGGAGGCCAATGCCACCGCAAGAGTCTCTCGACTGCAGCAGGAGGTCTTCTCACTCCAAGAGGACCTCAAGTCCCAGAAGGAGCTGGTGTTGCTCCTCCACAAGGCCCTGGAGGCCGCCCAGCAGGAGAAGCGGACGTGCACCCAGTTCCTGTCGGCCGAGGGGGAGCAGGAGCGGCTGGAGCTGGTGCGGCACCGCGAGCGGCACATCGCCGACCTGGAGGGGCGGCTGGAGGCCCAGCGGCAGGAGAAGACGGAGCTGGAGCAGAGGCTGGGCCAGGCAAATGGCCACGTGACGGAGCTACAGGAGCACGTGCAGCTGATGATGGAGAAGAACCACGCCAAGCAGGAGGTCATCCTCAAGCTGTCAGGGCAGGTGACCGCCTTCATGGATGACCCCCGACGCACTGTCTGCAACACCATGAACGCAGAGACCTTCCGCCAGATGCAAGAGCAGATCGACAACCTCAAGGATGACATTGAGGCGTACAAAATCCAAAACAAGTTCCTGAACTCTGAAATCTACCAGCTgacaaacctgtggaggaacagTTCTGAGCAGGAGAAGGGTCTGATGATGAAGTGTGCCTACCTGGAAGCTAAGAACTGTCAGATAGAGAGCAAGTACCTGGTGGTCCTCCGCAAGCTTCAGGAGAGCAAGAGTCTTGACAGCCAACATCAGGATATGGTGAAGCAGCTGATTGAAGatgcgctacagggagacatgAAGGATGTCTTCAAACTCAACCCTGTTCAGGAGTACGATGAGTACGGCTTCAAGATCATCCCAGAGTATGAGGTGGGGGACATGAAGCTGCTGGCCAAGATCCAGGCCCTGGAGATCCGCAACCACAACCTGCTGAGCCAGGACCTGGTGGACAAGCCCCTGCTGAGCCGCTGGGCAAACTACCTGGGTGGGCGCCCCTCAGGGGAGCCGGTGCCCTCGCCCGAGCTGAAGGGGCTGATCCGCTGTGGGGTGCCCCGGGAGTACCGGGAGCAGGTGTGGCGCTGGGTGGTCAGGACGCGCACCAAGGGCCTGCGAGAGCAAAACCCGCAGCGCTACCAGGAGCTGTGCCGGAAGAGCGAGACGTCGCAGCACCCCGCCTCACGCCAGATCCAGCTGGACCTCCACCGCACCCTCACCAGCAACCGGCGCTTCGCCTCACCCACGAGACCTGCCGTGCAGCAGCTGCGCCGCATCCTCATGGCCTTCTCCTGGCAAAACCCCACCATTGGATACTGCCAGGGCCTCAACAGGCTGGCTGCGATCGCACTGCTGGTGCTGAACAGCGAGGAGGATGCCTTCTGGTGCCTGGTGACCGTGGTGGAGACCATAATGCCACAGGACTACTACAACAAGACCCTCATAGCCTCCCAGGCCGACCAGAGAGTGCTGAAGGACTTCATGGCCGAGAAGATGCCACGCCTGACAGCCCACTTCGAGCAGCACAACGTCGACGTCTCGCTCATCACCTTCAACTGGTTCCTGGTGGTGTTCGTGGAGAGCCTGGCCAGTGACATCCTGCTGCGCCTGTGGGACGCCTTCCTGTACGAGGGCACCAAGGTCATATTCCGCTACGCACTGGCCCTCTTCAAGTACAAAGAAGATGACATCTTGAAGATTCATGACAGTGTGGAGATTTACCAGTACCTCCGGTTCTTCACCAGAACGATCTCCGACGGCAGGAAGCTGATGACCATAGCTTTCAATGACATGAACCCCTTCCCGATGAAGCTGTTGAGGAACCGGCGGTTCCTGCACAGGGAGAAGCTGCGGGTGGAGCTGCGAGAGCTGGAGAAGATCCAGGAGGAGTTTGTAACCAAGACGGTGGAGCGCAAAGACAAGGAGCTGGACACGGTTTTGAGCGATGACGAAGAGGACCTGTAGCAAGGCCATCTGGCCATGGTTCATAGGAGCTACTGGactctgtgtgcatgtgagcAACATGCACTCACCTGGGCAAGGGCTGTGGAGCCGAAGATTTCTGTTCACCTGGGCTTGACCAGCGGGGGCCTCACCTCAGGACAATTCCACAGTACTGTAGAGCATCTGCTGGACTCTATCTTTTACAGCAAGCAGTACACTGACGTCTGGTGTGAACTACTGTCTATAGGAGATCTAAGTGTCAGTTGGATAGTAATTTAAATGCACTTGCATCCAGgcctttttatatattgattggGATGTAGCACTAAGGGTGGCATCCTTTAACACACCCCTCTTTGCGGATTCCTCCCACAAAAGACTAAGGCTCCTTCTACAGAACCGTTTCCTCTAGCTTTGAATTAGTCAATAAAATCGTGTTGAGGGCTGCCCTACAGAAACCACTGaaactgtctctctgtgtgtaagCACAGGAAAAAGTCCTTCATTGATCGAAGGACAGGTCAGATGGGAAGGTCCCTCTAAAGTATGGGGTGGAGGGTTTCTCCATATAACCTCAGCTCTTGGAGTAAACACCAGCCTTCTGCCTCAGGTCCTCAGTCTACTTCCCTTTCAtgtaaagcaggggttcccaatgtctgatgatggagggccaatttacGGAGGTTGCACGGGATgggggccacagtagaaaatgaatcaccgatgaaaacaaaatgtcccaaatcatacctttttacttcctatacatttctgtttgggaacttttaaactttaaatgttttcattattttcccccaaattgttacagaaaatgttaaaaagtgtaaaaatatagtaaaggttcagaaaaggacTGGTTGAAGAATGGCTTTGGGGgaccgcactttgggaacccctgatgtTAAGGTAGCATTCAGGTCTTGCTGTCCTACGTCAGGCGATGGATTCCTTTGCTGTTGTACAAGCAGAACCAAAGAGTTCTACATCACAGGAGATGACTGAACCACAATGTAACAGTACTGTAAATGCATTATTCCCTTTCATTCAATGCAGTTTAGCAGAACTGCTTTATTTTTGATACAGTATTATACTATAAATTTATACCAGTCCAGTCAATTTATATAGAAGATATTATGTCCTTAGActgttttgtatacatttatacatctaCTGTAAGTAGTCTTAATATGCAGGAGGGGATTATTCAGATACATTTCCTTTGCCGTGGTTTCAGAAACTGGACAAAGTgtattctaaataaataaaatgtaaagaataatagtattatttacatacttgtatatttatatgactTTGAATACGCAGTGATGCGTGTTAAATTCTTTATCCTATGTGAGTAGATGCTGAATTAGGACATTTATACAGGTTTGTAAAGCTTTCTGTTACTCCGATGTGTCAGTGTTGAAATCAGTGTCTTGTCATTGAAAAAAGTGCAATACCAGGAAGTGTGGTAAGGAAACGAATGTCTAGTTAGCATGATTCCACATGGACTGTTTTGGGTGTGACCCGAGTAAATACTTTAACTTCTGCAAATCATTTCCACAATTGAATGTTTCCAAGGGTATACCGACTTCATATAAACACCACAACATTGTAGCTCATCTGTAAaactgttaaatattaaatgtatacataatgaTACTAAaagctttatatatttttatatttctatttctatcttTGGCTACTatgtattcagtttatttttccatgtggAGGAATCCACTCAGCGTAAACATCTTCTTTACAAGTAGTATGAGAAAGTGGTCTTGCTcatatatgttttgcatttctcaCAACAATGTTATTGCCCATCAGAAATGAAATTGGGATCCATAGTGTTGAATTGTATCATCTCTAACTATAAGTGAAGGCTACcggatttaaataaatcaatggttGGTGAAAAGTATTGGCTTGCTTCAAACGAACGTAAACTAAACCTAAACAAATCTGTTTAGCTTTTAACAGACATTGTggtttacaaattataaaagaCCACAGATTGGGtcaacattcaaaacaaaactggtgCTAGGTTAACAGAATAAATAAGTGCTTTTCCCATTCTAGTCATTAATTGGGAGGCCTATTCTTCCATTTACTAATAAACATCaccatacacattttattaaagtttccattttattacttttttaaaaagatatacataagaaatgatatataaaaaaaaaaaaaaaaattagttcAATGTTACAAACAATTACTGCAGTTAGGAGCTAAAAACTCTTGTTACACCAGACAAGTTAACTgatgtatttttgatttttgtatctTCATATAGAAACCATTAATCCCAAGTGATTAATGCACAATAGAATCTCAGtttctcaaaacaaaataacaaaaagtggAATCAGGTTGTAGCTGTACAAAGCCATTGTTCCAATCAGATATTATCGTCACATCGGTGGACGGAACAGATTGGCTTTTCCAAACAATGAAAATGAGATGCATAATTCTGTCGTTTAAAACCAATAGAAAAACCGACATGATCTTCAACTGCACTTGTGGCAATTCAGAAAGGGTATGGTGCATCGGTACAAGCAGGTCATTCAGTGTCATTTTAATGATGTCCGACAGATGAGGCTCAACATCACTCTTGCAGAATAGCCTACTGTAGAAACGACTAATAAACAATGATGATATAAACACAGACCCTTATATTATCCTGATTTGTATAATACTACTTGTGTAACTTTGACTTTCCTTTCATTCGAATTGGTAGTGTTCACTTTGGCATGCAGAGTGACTGGGTAAATCTGAAGCTTTGCATCTGATCCACGCAGAAAGGCCAAGACTAAGAGTCTTTGTCTCGTGGTTTAAATGAGTTTTCCTGGTCTATGGATAACATTAATGGCACACAGCACTGTCCCTCAGTGTCACTCATTGTTTATTGTTATCCTGAGAATGACCATGTTATTTTGTTcactacattttgaaaatgtgtaactAGTCAGGATAGTAAACATTTTAGGGAGTACCCATCCTTTATATGCAACTTTCAGTTCAAGTAGTATAATCTAAACGGCTTATGTTCACCTATTTCTTTGGTCTGTCTTATTTGTAAAATAGagctttttatttgtactttgcaaGTTAGTTTAAGACTGACTACATCATTTTGAGTTAGTGCTAttctacaaaaatacatgtctaccttttaaagatttgtttaattaaataatctatAACAATATAGGGAAGTATCTTACCACTGCGAACACACTTTGCATTACAGAGCATGAATACTTGTGTATAAACTGTAGCTCCTGTTAAAGACATTTGAACCCTACATGCTTTTAGAATAGTTTTTAGCTTAGAATAGTTAGTTAGTTCTTAAGAATCTATAAGTCTTGCACAAGCATTCAAACTGCCTCTAGCAACAACTGTTTTTGCATCTAAATCTTCCACATGTAACTGATGGGTTTGTTCATTTAGTCTTTCCACTAAAGATGGATTAGGTTATGAATCCATTTAGGTACAGTGTGATACTCTGGTTTAGCCGATAGTAAACCGTTCTGGTGCTAGGGGAGCCACATTTCATTAGATCACCAACGGCAATATTTTTCTTGCACATGTGTACACCACTCCACTGAAAACATCACAATAATCCCAAATGAGGAATAATGATTGACAAAGGtcacaagagaaaacaaactctTACAGTTTCGAGGTGAACAGTTAATCATTTACAAATCATGAAaagatttaatttcagatgCTTAATAAAAACCACGATTATGTACACAACAGTATTATTATACAACCACTTGGGTCCTGAATGTTGCGCTTTGActcaatttacatttatttttaccagtGAAATCCACCCgtcattgtattatatatagcTTTTGCCAATAAGTTTATCATTTATGAAGGAAATGTCCAGTCAGTTTTCAGTTAACAAAATTATGagtcttaaaaagaaaacaaaatgctacagaaaatattttgattcattCTAAAAAAGGGACTTGCCTCCAAAGACCAAAAACCCAGGAGCAAGCAGACTTGATTATCATGCTCTgattatatagatttattttttatttttaaggtagCGCATCTACCTTTAAAGATGGAAGTTCTTAAGGCAAGCTGAACTGGAGAACCAACTCCCACCTCTGGTCACATGGTCATTCTAGCAGTCAACATTATAAGTGGAATTTACAGCTGTGATGATCCAGCAGGAAGTAAAGCCTACTGAACCAGTTAAGGCAAGGTGCAAGATCATGTATATCCCTCCATCGCTCTTACAATAAGACCCACATGTTGCTCAAAGTGGAGAACcgtaattatttatacattagaAAACAGTGTTgctatatatagagagaaatatttttttatttttcgttttgttttttcatgtaatttAGTGCAAGTAGGAAGACTATCGATTTAAAGAGTTATTATTGCTCGTCCTCTCAGCTTCAGGGTTCTGCACAGGTCATACAAGCTCAGATCAGACGACGTAGGTTTCCTCTCgcactgtatacatacatttgggTGGTAAAAGCCTTTCTTTGTcaattggaaaaaaagaaaactagtatctaatttgaaattaaatagaaCATTTATGTAATAAAGCAACTTATTAGCATACAAGAAACATTGTAAGTAGTGTATGGCTGTTAGATTTGTATGGTTGGACTCAGTGGAGAACCCTGAGCTTGTCGAATTTTGCTATGAGCATAGTAAAGTCCAATGTGTAGGATAGTCTCAGAATAGCATTGTCCGGTTAATAGCAGGTCTTCCACTGAACAGTGTAAACTGGAAAATATACACCGGCACGGACTGTTCTCCCCTTAACAGTCTTAATTCATACGAAATGATTTTTATGACCACATACATCACTGTAGATGAAAGTTACATCTGTGagaattaataattgtaaaaaataaaattacaaaatatagaaaCAGGCCCAATAACCCCCCACaccaaaaataagaaagaaaacatggaatatGTCTTCCAAAACAAGTAGTTATGTTAAAGCtgatcgatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K20165 TBC1D2; TBC1 domain family member 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116176 lncRNA upstream 206438 23441409 ~ 23441770 (+) True G93131
TU116170 lncRNA upstream 219053 23427732 ~ 23429155 (+) True G93125
TU116144 lncRNA upstream 317236 23330734 ~ 23330972 (+) True G93102
TU116143 lncRNA upstream 317488 23330490 ~ 23330720 (+) True G93101
TU116142 lncRNA upstream 327153 23320451 ~ 23321055 (+) True G93100
TU116284 lncRNA downstream 3583 23675250 ~ 23675551 (+) True G93207
TU116285 lncRNA downstream 5133 23676800 ~ 23677092 (+) True G93208
TU116309 lncRNA downstream 88073 23759740 ~ 23765482 (+) False G93231
TU116310 lncRNA downstream 88073 23759740 ~ 23765482 (+) False G93231
TU116313 lncRNA downstream 88073 23759740 ~ 23765482 (+) False G93231
AMCG00017793 mRNA upstream 15540 23627901 ~ 23632668 (+) True AMCG00017793
AMCG00017794 mRNA upstream 32245 23610238 ~ 23615963 (+) True AMCG00017794
AMCG00017784 mRNA upstream 204291 23439746 ~ 23443917 (+) True AMCG00017784
AMCG00017785 mRNA upstream 295930 23348358 ~ 23352278 (+) True AMCG00017785
AMCG00017783 mRNA upstream 318639 23325654 ~ 23329569 (+) False AMCG00017783
AMCG00017803 mRNA downstream 42276 23713943 ~ 23748256 (+) True AMCG00017803
AMCG00017800 mRNA downstream 95704 23767371 ~ 23770666 (+) True AMCG00017800
AMCG00017801 mRNA downstream 110201 23781868 ~ 23793676 (+) True AMCG00017801
AMCG00017802 mRNA downstream 124132 23795799 ~ 23799246 (+) True AMCG00017802
AMCG00017797 mRNA downstream 173255 23844922 ~ 23857827 (+) True AMCG00017797
TU115792 other upstream 2826261 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2832662 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 4119915 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 4224529 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 4236218 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1033712 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 4971063 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 5761745 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 8735762 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 8789631 32461298 ~ 32465063 (+) True G94838

Expression Profile