RNA id: AMCG00017804


Basic Information

Item Value
RNA id AMCG00017804
length 4096
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00017804
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23857838 ~ 23863656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGATTGAAAAAAAAGATGGACGACTCCTAGCAGTTCCacatgttgtttattattattatttttattgaaggtTAAATAACCAACAACACCGTTCAACGGATATCACAAATACTTCGTATAAGGGGAAAAATGCAACGATTATTCCAGCTCACTCTAAAGcaatattgtaaatgttattgCTCTCGAAACCTGACCTGCTTGCAAGTGCAAAGGTTTGGGAATGACATTCATAGACTACGATCGACAGGTATCCCACGTGTTCCTGGTCTAATTACAACGGGGCAAAGTTTCAAAAGTAAATCTCCAACGTGCATTTCAGACCACGCATTGGTCAGATGCTACAGTGGCGGAGGAGGATCAGAAAGAACCATTCGCGAAAGGGCAAAGGCTTCATACAGATACACGTCTGTTGACccagaaagagaagaagaatTCGTTTTTGTGGACTACACATCAACCCCAGAGGAAACGAGTGACGATCATTTTGAAATCCCGGCCCTTGGAGCATGTCCGCAGAGCACAGAGAAGAAAGCTAAGCATGGGTCGGGTACAGAGGTGTATCACAGAGCCATCGAATTGCAACGACAATATTTGGAAACTGTCATGAACCCAGAATCAGAAATAGAGTTTCACGATGCCGGATACCCCCCTCATAACGTGAACtctaaaaagaagaaaaaacataagaTTTACGGCACGCCTGATAAGGGGGTCCCCCTGAGTGACACCCACTGTTCAGGCTGTGGGGCTTTGATGCATTGCACGGAACCCCTTTTGCCTGGGTATGTACCTAGTGAGAAATACAAACGACTAGTCGAAGAAAAGAAGCTCGACACATCGGTTTGCCAGCGGTGCTATTTGATCGTCCATCACCAGAAGGCATTGCATGTTCAGGTTTCCAAAGAGGAATATCGCGGTATCGTAAGTCGTATCCGACAAGAGAAAGCATTGGTTTTGCTGATCGTGGACGTGTTGGATCTGCCCGATTCTATAATCCTAGATCTATTGGAGCTGgtaggggaaaataaaaacatagtgGTGTTGGGAAATAAGATCGACCTGCTTCCCGCAGACTCTAGCAATTATCTAAAACGTGTCAAGCGACAGCTGCTGGCTTACTGCGTTGAAGCGGGCATCTCATCTGATAGAAACATCACCGACGTCCACCTGATCAGTGCCAAGACCGGGTATGGCATAGAAAACTTGATCTCTAGCCTCCAGAGCTCATGGAAATATAAAGGAGATGTGTATTTGGTGGGGACCACAAACGTGGGAAAATCGACACTCTTTAACACTTTGCTCGAGTCAGACTACTGTAAATCTAAAGCACCAGAAGTCATTCAGAAAGCAACAATCTCTCGATGGCCAGGAACCACACTCAATCTCCTGAAGTTCCCCATCATCAATCCCACTCCCTATCGCATGTTCAGGAGGTCTGAGAGACTGAAGGGTGATGCTTCTCAGTCTGACAAGGACCTGAGCCCCCAGGAGCTGAAGAGATTGCAGCAGCTCCGCAGACAGGGTTATTTAGTTGggcGAGTTGGAAGAACGTTTCGCTCAGCTGGGCAGAGTTACAGAGATGCTGATGTTGTAGAGTTTGATTACGAAGACCTCAGTTTggctggggaggaggaggaaggatcAGGCAGCGTCTTGAAGCCCACCAAACCAGTGGAGTTCACTCACAATGAGCTCAAAGATGCCCACTGGTTGTATGACACCCCAGGCATTGTGAAAGaacagtgtGTTCTTAGTTTGCTGACAGATCAGGAGCTAAAGATGGTGGTGCCCACTCATGCCATCACACCCAGGACCTTTGTACTGAAGCCAGGAATGGTGCTGTTTCTGGGTGCTTTGGGACGCATCGATTTTCTTAAGGGTGAGAAATCGTGTTGGCTCTCAGTTATTTCCTCTAATCTGCTGCCAGTTCACATCACCAGTCTGGAGAGAGCAGATGAAATTTACCAGAAGCATGCTGGGAAAGCACTTCTTGGGGTTCCTATCGGTGATGATGAGCGCATGAAACAGTTCCCACCTCTTGTTCCGCAAGACGTTGAGTTGAGGGGAGTGGGGCCTGAACTGGCAGTGGCTGACATCAAGTTTTCATCTGCAGgctggGTGGCGGTGACGGCTCAGGCCGAGGACCAGCTGCTGCTCCGGGTGCACGTGCCTGCGGGGGCCGGGCTGGGCCTGCGCACACCGCCGCTGCTGCCCCACGTCGTCCTGCTGAAGGGGGAGAGGATCAGGAAATCTCCTGCCTACAAAACCAAAAAGCCCACGGCCATGCTGGACAACAGCCGGTCTACTGCTGGAGCAGGGAGGTTACAGTTCAAGAAGatcaaaaaataatttccctccaTGCTATAAAGTCTGTTTCTGGATTGATTTTTAGACTGGGATCATCAGCCACTAAGGCATGCTCTTGCTGAGGATCTGTTGCTAATCACAAATACAGCTGACATGTTAATTATCTGTTTACTTAGAAaccagcttttatttatttatagagagCTGAGGCCACCAGTAGAGTACGTTTAAGGATCTAAATGAGGCCATCAAGAGATTGGAATTATTTTTACAGATGTGGTCAGTAACATCCTTAAATATGCTACCTAATAAAggtaatttcaaaatgttaacaaGAAAGCATAATTGTTCTATAATTTTACATACTATTTATTCTTGACTTTGTATAATAAACTAAACATTCTtgacattttatgtaatttgtatatgAATCCATGTTAACAGTAGTGTCACATTATTGGTCATCCGAGACCAAGTTTAGGACTAGATGGCAGCACTGGACATTTCTTTATGGAGAATAATCCAGTTCAGTGAAGCAATATGttgaataatacataaataaataaaaaacacggGTGTAATTTACCCTGGCttacattacatattatttggcacacagaaaatgtgtctATGAGGTAACACTGTGTCAAGAGTATAGGCAGTTGTCTACCCAACATCAGATACTGTGTGCAGGTCcatctaaatgtattttgcatttgtgcttattttgtgggtgtaattttatatatagattatacAGCCTTGCTTATGTGACATGGATTGAGAATTTGTGTACATAATCCTGACACCTAGCACAGAGGCTGTGTTTACTTTTGGTCCATAAACAAGGCCTTTGTCATTTTCTCTATTGTTCTAAGAATGGTTTCCCACACGTCTTTGTGTTCCACTTAAATCCACGGAGACTTGAGAAATGTCCACAAATAACCCTGTGACAACTAGAGCAGCTTTAACTTTTATTGAAAAATTCTACAGTGTTTATCTACAGCATGGCAGCAGTTCAAATACACTGGAAAAGTCAAATGCAGAAAAGCAAATGACTCCGTATCCCTTTCTTTCTTGAATTGCACACAGATTTTAAACCAAATcttcaatatgaaaaataatgcagATCAATTATACGGATATACTATACTCTGATtagaaacatttgcaaaatgGTGGATCATCTAGTCCTTCAGGACATTATCACTTACCATGGCTTTCCAAATTCAAACTCAGTCGTACAGTATGAATGATTACTGAAGTTCCTGAAACCAGCTGCATTACCAAAGCATGCAAgttcaatattaaaaagaatttgaaataaatgcaattgGCCATAGCAGAAGAAAATCTGTTGCAATTGCTGGATGggcaatacaaaacacattgtaGGTTatcatactgaaatgcatattttattttctgactttCAGTCCTGCCAATGGATTTGATAAAGCTCAGATTTCAACACAAGAAAAGTGGATACAGTTTCATTTAGAACAAAGAACAAATGGCAAATTACAGATATATACTTTTGATTACATTAATGATACATACATTGGAAAGAGTCACAGTGCTTTTCTTTCTAACTGCATAAAATGACCTACTCATtatgggaaaacaaatgtacacagaTAATCATTTCCAATGAGATAAAAACAGTAATATGTGGAGATATCTTAATACACAAATCTAAGAAAAGCTAACCACCCAAGATGAGTGCATTTTCATGTCAGATAGAGCACTTGAAATAAACACTACGTCCCCAGCACACACCAGTTTTA

Function

GO: NA

KEGG:

id description
K19832 NOA1; nitric oxide-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116235 lncRNA downstream 317718 23444211 ~ 23540120 (-) True G93173
TU116222 lncRNA downstream 528094 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 561592 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 562469 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 567157 23290332 ~ 23290681 (-) True G93090
TU116417 lncRNA upstream 43919 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 171040 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 180538 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 401716 24265372 ~ 24266487 (-) False AMCG00017819
TU116522 lncRNA upstream 437764 24301420 ~ 24301980 (-) True G93399
AMCG00017806 mRNA downstream 17675 23821734 ~ 23840163 (-) True AMCG00017806
AMCG00017808 mRNA downstream 45390 23795913 ~ 23812448 (-) True AMCG00017808
AMCG00017805 mRNA downstream 97601 23750371 ~ 23760237 (-) True AMCG00017805
AMCG00017807 mRNA downstream 167402 23671644 ~ 23690436 (-) True AMCG00017807
AMCG00017796 mRNA downstream 211291 23633455 ~ 23646547 (-) True AMCG00017796
AMCG00017811 mRNA upstream 11467 23875123 ~ 23884454 (-) True AMCG00017811
AMCG00017812 mRNA upstream 21528 23885184 ~ 23893945 (-) True AMCG00017812
AMCG00017815 mRNA upstream 185166 24048822 ~ 24053932 (-) True AMCG00017815
AMCG00017818 mRNA upstream 255821 24119477 ~ 24253084 (-) True AMCG00017818
AMCG00017819 mRNA upstream 401023 24264679 ~ 24270595 (-) True AMCG00017819
TU116215 other downstream 535884 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 535884 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 535884 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4438482 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 2149005 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2149005 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2240370 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2245404 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4239643 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile