RNA id: AMCG00017805


Basic Information

Item Value
RNA id AMCG00017805
length 2015
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00017805
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23750371 ~ 23760237 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATGTTCAGTAATACAGCTCATAGGGCCACTCGATGGtttcctctttctctgcagGCACACGCCAAACCGCGTTCGACTTCCCTCTCGCTTTCCGTAGTTCAAATACAACTACAGCCGCAGACTCCTTGACTGGATCACAAAGTAAAGCTGAAAATAATGTTCACGATTAGAAACGCGCTCCGTAGAGGCCACTGTCTCACACAGAAAATCAAATTAACGAAGACGACGAAGCAGCTCCGGGCCCTTATCTCGACTGGGCCGCAACAACAGCATGGAACATTCTATGAGATCCGCACCTACTTCATCAAACCCGAGATGAACAATGCCTTTTTGAAGCTGACCAATGAGAAGATCGAGCTGCGCACTTCGCACTCCCAGCTGCTTGGGTACTGGAACAGCTATGCCCACAGGGCCGCGGTGCGAGCTGCCCTGGCCCAGGACTCTCAGTGGGTGGAGCAATACATTTCCAAGGCCATGCCCATGCTTCGCTCCCAGGATAATGAGGTCACCTACTTGGTGCCATGGTGTCAGATAGAAATGCCACCAAAACAAGGTGTCTATGAGCTCGTTACATTCCAGATGAAGCCGGGGGGGCCGGCAGTGTGGGGCAAAGCATTCAGCAAAGCGATCAACACTCATGCCAAGGCCGGGTACTCCCACCTGGTCGGGGTCTTCCACACTGAGTTTGGTCTCCTCAACAGAGTGCACGTCCTGTGGTGGTACGAGGATCCGGACCAGCGAGCGGCGGCCAGGCACACGGCACACCAGGATGCCAGGGTCGTGGCAGCAGtgagagagagtgtcacTTACTTGGATTCCCAGAAGAACAAACTCCTGATTCCCACACCGTTTTCTCCACTAAAGTGATTTTCCCAAAGTAGATTTTTTGTGAAACACACAATTGCTTGAACTGTGAGGGCTAGAGGGCATCAATTTAAATCACTGTAAAACTATAATGTGTCTGGAATTGAACTCCTTTGAGCCTGATCAGCAATCCACAGGAGATTTAAGAGAGGATTCCTTGGAATTGGGGAGGATTTTAAGAACGCTAGACTGAAGACCATAGCAGTATTGAAAGAACATAATTGTATACCATACCTTATAGGGTCGAAAAGTTAATGGCGATACTGCTCATAAGACATCCCCACCTTCACTGGTACACATGTAAATTCTTTGTTTCTGCTTAAAACAGGTTTGTTACAGTGTAATATTTTGTGAGGTCcaatattgaaaatgaaagacaatgACAATCAAATCatctatgttaaaaaatatgcGGTTTATATGTTAATTTTTGTTTAATggactgtaattaaaaaaaaaaaaaaatcttcactttATGATCCtcacaaagaaatatataattgggTACTGGAaggttgttttttaacaatcGGTTTGTtctagttttacattttgtggtagttttttttacacttcAACCTTGGAGTCACCATTTTTTAATCCACCTGATTCAATGCTAATAATCCACAAGCCAGCACAGGAGCAACATAAACAGCATACACGCTTCTACAAACCTGCACAAACCAGCCTCATCTccttgcaatgcaatgcaatgcaccacacacacaccagacacaGTGGGCTCCTGGAAAGCCACAGAGGTCACTTAAACGAAGGGAATTCTGTCCCACTCTGAACCCACCAAGTCCTACACAGTCAGTTGTTTACCACCTGTGGAAGCATCTTGTTCACAGCTGGACTATATGGCAGAGGCCTTtgtcaaatattttgtataacaGATGAGGAAATATTGATGATGTAACTCAAAGACACAAAGGGGTAATTTCTATCCTGTCTGGTGTTATAAAGGTGTAAGTAAGTGGAGTGAATTCTATGAACTGGCATTAATCcaccataaaaaaaacagattatatatatagatatatatcacacacatttcctgttaaaaaaaatcttggtcAATGGATACTGTACACAATGTTACATATGTTCATTAAACCAACAAAGTCATTGCAACAAGTGAAAAAA

Function

GO: NA

KEGG:

id description
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116235 lncRNA downstream 210251 23444211 ~ 23540120 (-) True G93173
TU116222 lncRNA downstream 420627 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 454125 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 455002 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 459690 23290332 ~ 23290681 (-) True G93090
TU116417 lncRNA upstream 147338 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 274459 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 283957 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 505135 24265372 ~ 24266487 (-) False AMCG00017819
TU116522 lncRNA upstream 541183 24301420 ~ 24301980 (-) True G93399
AMCG00017807 mRNA downstream 59935 23671644 ~ 23690436 (-) True AMCG00017807
AMCG00017796 mRNA downstream 103824 23633455 ~ 23646547 (-) True AMCG00017796
AMCG00017795 mRNA downstream 122953 23617680 ~ 23627418 (-) True AMCG00017795
AMCG00017792 mRNA downstream 231345 23468839 ~ 23519026 (-) True AMCG00017792
AMCG00017791 mRNA downstream 285608 23458927 ~ 23464763 (-) True AMCG00017791
AMCG00017808 mRNA upstream 35676 23795913 ~ 23812448 (-) True AMCG00017808
AMCG00017806 mRNA upstream 61497 23821734 ~ 23840163 (-) True AMCG00017806
AMCG00017804 mRNA upstream 97601 23857838 ~ 23863656 (-) True AMCG00017804
AMCG00017811 mRNA upstream 114886 23875123 ~ 23884454 (-) True AMCG00017811
AMCG00017812 mRNA upstream 124947 23885184 ~ 23893945 (-) True AMCG00017812
TU116215 other downstream 428417 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 428417 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 428417 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4331015 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 2252424 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2252424 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2343789 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2348823 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4343062 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile