RNA id: AMCG00017807


Basic Information

Item Value
RNA id AMCG00017807
length 2430
RNA type mRNA
GC content 0.44
exon number 16
gene id AMCG00017807
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23671644 ~ 23690436 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAGCCAAGGCAGTTTGGGTCTACATTCACCACACTGTACTTTACCAATCATGTCCAGTCCAAAGAGAAAAGCTGAGACGGGGCATAAAGACAGAGGGGATTCTGGAACCATTtttgcattgaaaaataaaaatatctacaGGAGGTCAAAAAGAGAATGGAAACCCCTGGAGGATCGGAGCTGTACCGATATCCCATGGCTACTCATATtcattgttttctgcattggCATGGGATGCATCTGTGGCTTTGCTGTTGCCACCGGAGCAGCTTCAAGGCTGGTTTTTGGATATGACAGCTACGGGAACACCTGTGGCCAGAAGAACTCAAAAATAGAGGGCATAGAATTGAGTGGAGAGGATCAGACCCAAAAGAGatttgtcttcttCTTGGACCCCTGCAACATTGACCTAGTTAACAGGAAAATCAAGTCCATGGCTCTGTGTGTCTCGAAGTGTCCGGACACAGAGTTAAAGACTTACAGTGATGTCAAGAAGTTTGCAACAGCGAATGaatcTTACCTCTGTTCCTATCAGGTGCCAATCAGTAAATATACCAGTCACGCGGACAGATCTACATTGTGTCCCAAACTTCCTGTACCTGCAAGCAAGTCAATCCCTATGTTCCATCGCTGCACTCCGGTAGACATCAGCTGCTATACCAAGTTTGCTGAAGCCCTCATCACCTTTGTCAGTGATAATAGCATGCTGCACAGACTGATTACTGGAGTGATGACCAGCAGAGAGATCATCATGGGCCTTTGTGTGCTGGCCCTAGTGCTCTCCATGATCCTGATGGTCATCATCCGGTACATCTCCGCAGTGCTCGTCTGGATCCTGACGGCTCTGGTAGTGCTGGGCTCACTGGGGGGAACAGGTGTTCTGTGGTGGCTCTATGTGGATCACAAGAAGTCGCTGAATAACCTCATCGCTAGTGATGAAGTGGAAGTAGCCAAGGACAATGTCCAAGCACTGCTGGTCTATGCGATCGCTGCCACCATTTTCACGgtGATCTTACTCCTGCTCATGTTCTTTATGCGGAAGAGAGTGGCCCTTACAATTGCCCTGTTCCACGTGGCTGGGAAAGTTTTTATCCATCTTCCCCTGCTCGTCTTCCAGCCTTTCTGGACCTTTCTGGCACTGATGTTTTTCTGGATGTACTGGATCATGGTTTTGCTGTTCCTGGGCACAACAGGGCATCCAACTCAGAATGAGAAGGGCTTGGTAGAGTTCAAGATGAACGGCCCGTTGCAGTACATGACTTGGTATCATGCAGTTGGATTGATCTGGATAAGCGAggaTAAATCCAAGCTGCCACTCACTCCCATACTGTCCTCTGTATTCCGGCTCCTCCGCTACCATATTGGTACAGTGGCTAAAGGATCCTTCATCATTACATTAGTGAAAATCCCTCGCTTGATCCTCATGTACATTCATAACCAGCTAAAAGGAAAAGAAAATGCGTGTGCCCGCTGCATGTTAAAAGCTTGTATTTGCTGCCTGTGGTGTCTCGAGAAGTGCCTCAATTATTTGAACcagaatgCATATGCAGCTACAGCCATCAATAGCACCAATTTCTGCACCTCGGCAAAAGACGCCTTTGTAATTCTGGTGGAAAATGCATTGAGAGTCGCGGCTATCAATACTGTtggagattttgttttgtttcttggaaAGATCTTGATCGTGTCCAGCACAGCCTTTGTGGGAGTACTGGCTCTGAACTACCAGCGGGATTACACTGTGTGGGTCCTTCCCCTGATCATAGTGtgcctctttgctttcctggtTGCCCATTGCTTCCTCTCCATATATGAAATCGTGGTGGACGTTTTGTTCCTGTGTTTTGCCATCGATACCAAATACAATGACGGAAGCCCCGGCAAAGAGTATTACATGGATAAGGCTCTTATGGAGTTTGTGGAGAACAGCAGGAAGGCGATGAAGGAGCGCGGCAGGGGCAGGCCGGACTCGGCGGACGGCCGGGAGATGAAGCCCATGGCCCCTGGAGCAAGTTCAGCTTGACCAAAATCACCTAATGGGACTTTTTTAGACattccaaatgtttatttttaccaATGTGTAACATGTTTACTATGGTTTCACTCCAgggaatacaatattttaataagaaactGTATAATAACTCTTACGTATTTAAGCACTTTATATCAAAGctctgtgtattttaacaactgATGCATTTTAGTAGtgatttcctttttatatatatgactaaaagaaaagaaaatcatctAGATTAATGCAGTACTAAAATGTCTAGATTCATTGCAAAAGTTTAGTTTGATCTTGTTTGAAATGTAAGAAACAATTTCAATTGAATTTTGTAAAATACCACTACATGCATTTTTTCCTGTAATGAAActgactttatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K06515 SLC44A1, CD92; solute carrier family 44 (choline transporter-like protein), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116235 lncRNA downstream 131524 23444211 ~ 23540120 (-) True G93173
TU116222 lncRNA downstream 341900 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 375398 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 376275 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 380963 23290332 ~ 23290681 (-) True G93090
TU116417 lncRNA upstream 217139 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 344260 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 353758 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 574936 24265372 ~ 24266487 (-) False AMCG00017819
TU116522 lncRNA upstream 610984 24301420 ~ 24301980 (-) True G93399
AMCG00017796 mRNA downstream 25097 23633455 ~ 23646547 (-) True AMCG00017796
AMCG00017795 mRNA downstream 44226 23617680 ~ 23627418 (-) True AMCG00017795
AMCG00017792 mRNA downstream 152618 23468839 ~ 23519026 (-) True AMCG00017792
AMCG00017791 mRNA downstream 206881 23458927 ~ 23464763 (-) True AMCG00017791
AMCG00017790 mRNA downstream 214628 23445924 ~ 23457016 (-) True AMCG00017790
AMCG00017805 mRNA upstream 59935 23750371 ~ 23760237 (-) True AMCG00017805
AMCG00017808 mRNA upstream 105477 23795913 ~ 23812448 (-) True AMCG00017808
AMCG00017806 mRNA upstream 131298 23821734 ~ 23840163 (-) True AMCG00017806
AMCG00017804 mRNA upstream 167402 23857838 ~ 23863656 (-) True AMCG00017804
AMCG00017811 mRNA upstream 184687 23875123 ~ 23884454 (-) True AMCG00017811
TU116215 other downstream 349690 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 349690 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 349690 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4252288 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 2322225 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2322225 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2413590 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2418624 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4412863 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015076 False 13402 mRNA 0.38 7 NC_007125.7 6331499 ~ 6365223 (-)
eurasian perch (Perca fluviatilis) TU148635 False 4761 lncRNA 0.40 2 NC_053121.1 39913948 ~ 39923955 (+)
tiger barb (Puntius tetrazona) TU148635 True 220 lncRNA 0.46 1 NC_056712.1 17599359 ~ 17599578 (-)