RNA id: AMCG00017815


Basic Information

Item Value
RNA id AMCG00017815
length 2959
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00017815
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24048822 ~ 24053932 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAGAGCAAGGCAATACTGCACATCAGTCCTGTTGAAGGAAGTAAACATTGTACATTAGATTGCTGGTCCTGTAACCTGTGATTCTATACACAGAGAAAGGTGTTCCTTAATGTGTGCatcatgcatttgtttgcttttcttgtatGTTTGAGATTCTTCCTGGCATTTATTTCAGAACACCTGTCACACACCTACAATGCACAGTAGACATATCGCACATCTGCATCTTttagattacaaaataaagtatttgccATTCCATAGGGTCACATGCACGTGTTTCTGAAGTTTTACAGTTTGGGTTTTTAAGGTGAAGGAGAGATTCAGAGATGGCCGATACGGAAAACAGGAGTACTCCCCCTCAGGGTGGGCCCATGCTGTTCATGTTGAGCAACAAATTGGAAACTGCTATGTGGCTCTCCCGGCTCTTCACCGTATACTGCTCCATTTTGTTTATCTTGCCAGTTTTGGGGATACAGGAGGCTGCTAATTTCTATCAGCGTGCCTTGTTGGCCAATGCTCTGACCAGTGCTCTCCGGCTACACCAAAGGCTACCTCACTTCCAGCTGAGCAGAGCATTCCTCACCCAGGCCTTGCAAGAAGACAGCTGCCATTATCTGTTGTATTCCCTAATATTAGTGAACTCCTATCCAGTTACAATGAGTATATTCCCAGTCTTCCTGTTTTCATTGCTTCATGCAACAACCTACACAAAGAAAGTTCTTGATGCAATGGGTCCCACAAGTTTGGCCTTTGTGAGGAACTTTCTGGACAAGCTGACGGCAAACCAACAGAATATCCTCAAATTTATTGCCTGCAATGAAATTTTCTTGATGCCAGCTACAGTGTTCATGCTTTTCAGTAACCAAGGCAGCTTGCTCCAGCCGTTCCTTTACTACAGGTTTCTCACCCTCCGTTACTCCTCTCGGAGAAACCCCTACTGTCGGACTCTGTTCACAGAGCTTAGGATCCTACTTGAACATCTCGTAATGAAGCCGGTCTGCCCTGCGTTTGTCCGAAGAATGTGTCTCAGCAGCATTGCCTTTGTTAGCCGCCTGGCGCCAACCGGAGCataaaattgacatttttggGAGCACTCTAGGGATTGACAAACACTTTGAATGTTTCCGGGAGCTGGTATAACTGCTACTTGCAGTCGTTTGCTCGTATGTTAACCCACAATGCACTGAACTTCAAAGTCTGGTCCGTTCTAAACCCACCTTCCCGGCATCTGTCACACTCCCATGTATTGAAATCTctattacagtttattttaagtgtcttaAGGTTGGTCAATAAAGTGCTGCAGTCCTGGTCATTCCTTCAGGATTCTTCGGTTTTAACCATTTATCAAGTTTTGGgtatgttttaaattctgtCTAGGATATTAAAAGGTATGTTGTcgcaattacattttctggatgcatccaaacattttatttgtgtgtacgTATATATGTGacaatgtatgtatacacacacacacacacatatatatatttattttcattgaatatttaaaattgagcagttgaaattgatattttttttaatgtatatcatTGAACTGTACTTTACCAGCCAGATTTGTTTGATATCTTCTATTCTCTTGATTTTTGTCTCCACGTATAATATTGAAATCATTATGCTTAATTTCTGTTAAAGTACTCTGAAGAAATTGAAACAGTTTGGAAGGTTCCAAGTAAATGTGATCTTAGTTGTACTATGCAtttaaaagctgtgttttaaCCATTTTTGTTAGATTTTCTTTAATATCAACATAATAGTAAGgaattgtaaaatacttaaatgtgaatattttatataagGAGGTCCCCTGTAAAGGTTCTCTATTCCAAGACAGTTTTGTACTGAACCCAAATCCAAAACGTCTGGTTTCAGCCACAGTTGTCAAGTCAGGAGAGGTCACTTGGGACCAAGTACGCGAGAAACTAAATATCTTCTGTGTTCCTTCATACATTCTTCACTTTAATAAGATAACCCTGAAATATTAGCCATTTAAAGCTTAGAAATGTGTGTGGTGATGAGTATTTACCTAGACAAGGGAAATATTAAGATGTTGTATTTCAATGTTGCTGTTGTAGCAGCTCTGCAGCGCTGGCATTGAGAGGAAACGCAAACGCTGTATTGGCGACTTACTCGATACCATCTTAATCTGCATCCGGTTACAGGACGCTTCAGAGGTACAGTCTTGATCccttattagaaaataaattggcATATCTGTTCATTCTTTTAAGGCATGCTTTATTCTTGTTAATGGCACTTTAATTTAGGTAGCCATGTCGTTTGTGTACAATAGAAACCTTGACCTCCAGGAACTAATTGTAGAAATTCTATGGAATCTAATTTATATTTCCTATTTaattgctgtatattttataacttCAAGATGGTTGTTTATCAGCATTTTAATGGACTATCTCTGCAGCTAGGATGTGGCTACATGAGCTACTgttgtacagtttattttgtgccCCTTCTTCGAGGTCTCTCctattctgtaaaatgttttatttcattacatgAACTTCCTATTTAAAGGATAATAAAGTATGTGGCTGGAAGTTTTCTCTTGTTTGCCAGGATCCTTACAAATCTCAACGTTTAACATCTTCCTATTTGAAAATTCATATTGATCAGTGTCTGGCCAACCTGCACAGCTGTGTTTCAAAATACTACACtttaatctgtattttctttatacattttagtgtACCTTACTTTGTGTTGCTTCATGATCTGTTCCTTTCTTAGATCACATTTATAGAAGTATTGCATTGCACCAGGCATGAGACCGGATAGATGATGTTTCAGAAAGCTCAGCAAAACCTGTGTGTAgttatattaaatgcattattttttatttaaattataaataaagtatagaTAGGCCTATATGCAagaaaggtgtgtgtgtatacagtgagggaaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20724 TMEM33; transmembrane protein 33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116452 lncRNA downstream 2453 24044194 ~ 24046369 (-) True G93355
TU116446 lncRNA downstream 11212 24034696 ~ 24037610 (-) True G93350
TU116417 lncRNA downstream 138143 23907575 ~ 23910679 (-) True G93324
TU116235 lncRNA downstream 508702 23444211 ~ 23540120 (-) True G93173
TU116222 lncRNA downstream 719078 23326525 ~ 23329744 (-) True G93165
TU116513 lncRNA upstream 211440 24265372 ~ 24266487 (-) False AMCG00017819
TU116522 lncRNA upstream 247488 24301420 ~ 24301980 (-) True G93399
TU116575 lncRNA upstream 451450 24505382 ~ 24505610 (-) True G93434
TU116666 lncRNA upstream 623233 24677165 ~ 24679900 (-) True G93500
TU116683 lncRNA upstream 672006 24725938 ~ 24730222 (-) True G93509
AMCG00017812 mRNA downstream 154877 23885184 ~ 23893945 (-) True AMCG00017812
AMCG00017811 mRNA downstream 164368 23875123 ~ 23884454 (-) True AMCG00017811
AMCG00017804 mRNA downstream 185166 23857838 ~ 23863656 (-) True AMCG00017804
AMCG00017806 mRNA downstream 208659 23821734 ~ 23840163 (-) True AMCG00017806
AMCG00017808 mRNA downstream 236374 23795913 ~ 23812448 (-) True AMCG00017808
AMCG00017818 mRNA upstream 65545 24119477 ~ 24253084 (-) True AMCG00017818
AMCG00017819 mRNA upstream 210747 24264679 ~ 24270595 (-) True AMCG00017819
AMCG00017824 mRNA upstream 386604 24440536 ~ 24568029 (-) True AMCG00017824
AMCG00017827 mRNA upstream 537085 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017828 mRNA upstream 557497 24611429 ~ 24612007 (-) True AMCG00017828
TU116215 other downstream 726868 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 726868 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 726868 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4629466 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1958729 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1958729 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2050094 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2055128 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4049367 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile