RNA id: AMCG00017824


Basic Information

Item Value
RNA id AMCG00017824
length 3153
RNA type mRNA
GC content 0.53
exon number 18
gene id AMCG00017824
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24440536 ~ 24568029 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCTGTGTGTACATGACAAAAGCGTAGCCCCGGTTCTTGCCGTCAAAGTCCATCATCAGACGCATTTCGTAGATGCGCCCCACAGATTCAAACACCGGCACCAGCTCGTCCTCGTACACATCTCTGGGAATCTTCCCCACGAAAATCTCACAGCCACGGGGGGGAGAGGTCCCTTCCCAGCCAGGAGGAGGGCCATACTTACGCTGACCATTTTCCTGGACCATGCCGTAGCCGCTGCGCTCCATCAGGGCCAAGAGAGCACTTTCGTTTGGGGCTCCAGACACTCCTTCGGGGACCTTGCACGCAGATTTGTTAGAAGCGCTATTACTCATGGCAGCAGTGGAGTCTTCAGCTGTCATTATGCCACAACCATTCAATTTGTTCTGAGGCCTAGAGTAACAACATCTGACTCGCACAAATCACAGCCCTTAACCGAGGAGTGCTGGCAACACGTCCACAAACTGGCCACCGCTGGCAAGAAAAGCCAGTGTTTCTGTCAAGTCTACAGGACAGACGGGCTAAGTCTGGCTGGCAGTCGCCTACAGGTGGACACATATATAATGAAACTGAGCATACCTAGCTTCGAACACATTCGGCCAGAGACCAGAGACAATGGGAAAACACTAAAAATGCTAAAGTGTGTCATCAGCCCCAAGCTCCAAGGTGCTAAGCTCCCAATTGCTGTGGGCCCGAGGTACAGCCGTTACTGGAAACAGCAGCTTCTGAGCTACAGGGTCCAAGTTCACGCCATCACCGAAGGAGCCTTCCTGAGaGTGGCTCGATACACGTTCAAGGTCAAGCCGAgaacaaggaaaaacaatgaaTCAGCCTTTAGTCTCACACTGctATATCATATTCAAGCCTTTGAGATCCCAACAGTACCAGCTCTTGCCCAAGCTGGGCTGAAGCAGATGCTGACATTGAGGAGAGGAATGGAGTTCCAGTCTTACGGCCACCAGATTACACGAGAGATCTCACGCTTGGAAGGCATGACCATTTCAGAGAAGAAAGTCCCTCCTAAGAAGAACTCGGAGAGCTTTGGTTTCCCAGACCACATCTATGTCCACGCAGCCGCTGTTTTCCAGAGTTTTCATGTCGAGAAACCCATCGATCGAAGGCTAGTGAGCTACGGTAACAAGACCGGACTCCCTGTGTTGGAATCCAAAGATGAAAAAACTCAGCATTGTGCCTATGAGTTGGCATTCAATGCGCTGAAATATCAAGACTTACTGGAAGATATAATGATTGACAGCTGCCTTTACCTATCTCAGTCCATGCCTGATGAGCTCACAAGCCTGGTGGTCGTCATGCTGTATGATTTTCAAGATCGCAAATTCTTGCCGAGAAGCTGCCCCGACAGGGATGATGAGATTGAGGAAGTGAGGGAAGTGGAAAAGTGCCTTTTCAGATATAAAACTAAACTTGCTGCTTCCCTGGCCCGCTGTCGAATCAAACACGACCTTCTCACCATTGACTTCATGTTACCCGAATCTGTGAGGAAAAAGCAAGAGCGAGCCAGCTCTCTGCCACTGTACGGCTGGGTGAACACACTGAAAGCcagCCTTGAAGATGTGGTCAGCTCcttggagagagagggattttCAAAGGTAAAATCAATCACTGAACTTGAGGGATTAACTTTCTGTCAGGACCCTCACTGTCaggatttgttggtttttccaCCACACCTCAAAGCTGACCTTTACAGGACAAAGCTCTTAACCGACTACAAGCTTGTTATTCAGGACAAGTCTCGGAGTCTGGCTACTCACTCAGCGAAGGCCTTGTTGAACCCAGACCAAGATGTCATAATTGCGAACGCGGCGTCCGGCTTCACCATCGCCCACATGGCGGCTCTGACCAGCCAGAGCGCGGGTCGGGTGCTCGTGTGTGGGGTGAAGTCGCCAGCACTCAGAGAGGAGCTGCAGGACATCCTCTCACACATGGAGTGCAGGAATGTAAAACTTCTTCCCGAGAATTTTGCAGACATTGAACCTACAGACGTGCGACTCCAGAAGGCCAAAGTCATCCTGCTACTGCCTCCATGTTCAGCCTCGGGTGTCAGTAATCCAGTCGACTTCATCCTTAATGAAAGTGGAGACGCTGGTCTTCTCCGGGACCTTTCGCAAGGATCAATATCGGAAGAGAGGTTGAACGCCCTGGTCAAGCAGCAACTGCAAGACGTCTTGCTGGCTGTGAAATTTCTGAAGGTGCTTGCCGTGGTATACTGCACGTGTTCGCTGTATCCGGAGGAGAACGAGGAGGTGGTGAGGAGGGCCCTGGAGTACAAACCAGAGAGCAGCAAAGTGCAGCCTTATAGACTCAGTCCTCCACTGTGCTGCACGTCAGAGATAAATAACGCAAGGGACGGGTTTTTCAGAGTGGACCCATCTGAGAAGGCCAATGGCTGCTTTCTAGCAGTGCTGAAAAGAGAGGCCCCCTCTGGGACAGTTGCATCGAAGGATGTGCTGGCTCGTGCTGCAGCGAAGGGGCTGCTGGAAGGCATTGGATCAGAGAAGCACACAAAGAAGGAGAAGAGGCGGCCCAAAGTGGCAGTGCAGCCGGTCACGCCAGTCAACGAGACCCAGGCCCGCATCGCAGAGTTTCTCACAAGAGAGAGCGGAGAGAGTGCTGCTGTGGACGTCACAGAGAAGGCCTCCGCAAACCCCACGCTGAAGACCACAGAGAAGGGCATGGTGAAGGCCACGCCGGGGGCCACGGAGAAGACCACAGCAAAGTCCATGACGAAGGCCACGGTGAGCAGTTCCTCCTGGTACCGCGAGATGAGTAAGAGCAAGCAGACCCCCAAGTCCACGGTCTCCAGTTCTGTCTCTAATAGCATGAAGAAGAGCCTGCCTAAATTCTCCCCCACAAGCCGTTTTTATGAGCAGCGCATCTGTCCCCCAAAACCAAGACTGCAGGAGAAGATGTCTGTGCTGAAGCCAGTGGAGCTGGTGTTCCCCCCAGTCATGTTTCCCAGCTTCAGCCCCCTCATGAACAAGAGCAGGCCCCCCCCGCATCTCTCCGGCTTTCTCTGGAAGGGAGCCAGAGTCACCCAATACTCTCTCACTCCATCCACCGCCAGGGTCAGCAGATTTAGAGAGACGCTCCCTACAGCCGTGGTGTGGCACCCGCGACCGTGGCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116522 lncRNA downstream 138556 24301420 ~ 24301980 (-) True G93399
TU116513 lncRNA downstream 174049 24265372 ~ 24266487 (-) False AMCG00017819
TU116452 lncRNA downstream 394167 24044194 ~ 24046369 (-) True G93355
TU116446 lncRNA downstream 402926 24034696 ~ 24037610 (-) True G93350
TU116417 lncRNA downstream 529857 23907575 ~ 23910679 (-) True G93324
TU116666 lncRNA upstream 109136 24677165 ~ 24679900 (-) True G93500
TU116683 lncRNA upstream 157909 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA upstream 160813 24728842 ~ 24730222 (-) False G93509
TU116771 lncRNA upstream 354438 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 379629 24947658 ~ 24949136 (-) True AMCG00017839
AMCG00017819 mRNA downstream 169941 24264679 ~ 24270595 (-) True AMCG00017819
AMCG00017818 mRNA downstream 187452 24119477 ~ 24253084 (-) True AMCG00017818
AMCG00017815 mRNA downstream 386604 24048822 ~ 24053932 (-) True AMCG00017815
AMCG00017812 mRNA downstream 546591 23885184 ~ 23893945 (-) True AMCG00017812
AMCG00017811 mRNA downstream 556082 23875123 ~ 23884454 (-) True AMCG00017811
AMCG00017827 mRNA upstream 22988 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017828 mRNA upstream 43400 24611429 ~ 24612007 (-) True AMCG00017828
AMCG00017826 mRNA upstream 60342 24628371 ~ 24649998 (-) True AMCG00017826
AMCG00017834 mRNA upstream 117274 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017833 mRNA upstream 148421 24716450 ~ 24725692 (-) True AMCG00017833
TU116215 other downstream 1118582 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1118582 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1118582 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5021180 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1444632 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1444632 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1535997 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1541031 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3535270 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile