RNA id: AMCG00017826


Basic Information

Item Value
RNA id AMCG00017826
length 5199
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00017826
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24628371 ~ 24649998 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCtcggaaaaagaaaaatggccaAAGCCCCGCTAGGGTCCCGGGAATGACACACGGCACCGACGGAGCTAGCGACGCAGGGGACGGCAGGACGATGGCCAGAAGTGACCGTATCAGAGGGGTGGGCATGGGGCTCTCAAACTTCAGCAACACCAGCTCTGCCAGGGAAGAAACCCTCAATAGCATGAGGGAAATGTTTTCCCATCTGGATCCCGAGGTTATTTATATGGTCCTTTCCGAGTGTGATTTCCAAGTGGAAGTGGCAATGGACTCGCTACTCGAGCTCTCTGGAGCTGCTGAAGGAGTCAACGTGCCCCCCTTTGCCTCAGGGTTTGAGTCTGCGGCTGCTCTTTTAGGACCCAAAACCCACACGCCCGTCTGCCTCCCTTGGGACGAGACGGGAGTCCAAGGGGGTTGGATTCCTGCAGCTTCGGGGAATGACATGGAAGAACTGGATGTAGTCGGCACACATCTAACAAAAGATTTCGATGAACTCATAGACAACGCATTGGAGACTCTTTCAGACTCTTTCCTGCCTGCTTTGCCACACTGTCCTTCTCCCAGAGATCTGCACTCAGGGTCTTGCAGTGAGTTGCCCGAATTGATCAAATCCAGCCTGGACAACAGGTCCAAATCACAGTGGCACAATTCCACAGCAGGGCACCAGCACGTGGCTAAAGCTTCAGAGCTGCCTGAAACCATCAACAGGCAATCCCCTGTGAGTGGACTGAGTTTTACAGGGACAGCGTTTGAGACGGATGAGTCCAGCCTGCTTGATTTCAGTCACTTAACTATGGAATCAGGGAACACCAAGCCAGTGCTGGACTTGCTAAGCAGTGAGAGACCATCAGCCTTCCAGGCATATAAGAGTTCCAGAAATCAGCCCAACCCCTCTGCAGGAGAACCCGATCACAGCAGACTTTTTGGGAACAACCCTGGCAGTGCAGAGCAGGATTTCCAACTGAGCTCTGAGAATAGGACTATGGCAAACTCTCTGAGGGAAAGCAGGCCCCCTGCTGCCCCATTGTTGTGGAATACTCAGGCTCCCGAGTTTCAGCCGCGCTCTGAGGAGCCTGCCTTTGTCACCCCCATACTGAAGAATCCTGTGCCCTGGAATCATAGCTCGAGTGTGAGAATTGTCCCCAGCATCACACAGTCTCGTTTCAGAACAGCGTTCCTCCCACAGTCATGGGTACCGCCACATCCCCTGAGACCTCCGCTGCATCGCTCTGCCAGGAGACCAGTGCTGGTGGGCCAGGTGCTGGTCTTACTGAGAGGAGCCCCAGGATCAGGAAAGTCCACCTTGGCCAGGAACCTTCTGGATCAAAATCCCGGGGGCGTGGTTTTAAGTACAGATGACTACTTCTGTCGCAACAAAGTGTACCAGTTTGACTCTACTGTCTTGGGGGAGGCTCATGAGTGGAACCACCAACGAGCCAGAGAGGCATTCAGAAAGGGTCTCTCTCCAGTCATTATCGATAACACCAACATGCAAGTTTGGGAAATGAAACCGTATGTTGCTATGGCTCTTCAGCACTGTTACAAAGTGATATTTCGTGAGCCAGACACCTGGTGGAAATCAAAACCACGAGAGCTAGAAAGACGCACTAAGCATGGTGTGCACAAGGAAAAGATAAAACGAATGCTGGAGCATTATGAGCCTTATGTTACTGTGCACAGTATTATGCGTTCTGCATCTCCcaaggaaaaagaagaaactgaCCACGTGCTGCCCTGCCCTGAGGAGAACGGCCTTCCCGAATCTATAAAATCAGAGGTAAGACCTGACCTTGTGGAAGAACCACCCTGCAAACCAAGTCAAGGGAAGAGTGACTTTCCCCTTTTGCCCCTGCCTGATGTATCATCCGTGGGAGACAGTGTTTTCAAGGAAGAGAGACTAGGCCAAAGTAGCTTTATTGAACCTCCTGGTTCCAAAGGCTGTGCACAGACAGAAGAGACTTCCGACACAGACTTGCAGCCAGACCAGCACCTTAACACGTGTACTTCAGATTCGGAGCCGGCTGCCCATTCATTAGCTTCAGATAAAAGTGAAACCCTCACTTTGAGCACTGAATTTGGCTTGGATGATAGTGCAAGGGAGCCTGCAGATAGTGAAGTGCCCACAGCCTTTTTTGAATCTATTGGTCAGAGAGTAAGGCGTAAGAGGCACAGGGGTCCACCCACTGAACAGGGCAATGAATTGGTAATGAGTGATGCTGCTGAGAAGCTGAGTGAGAGTGAACAAGAAAACAGAATTATGTGTGCTCCCAGTAACCCCATGAGGCCAGAACTGTTAAAGTTTGTTGGTGACTGGCCTTCAGAGCTGGTACTGGAGCAACGGCAGCACAGGTCAAGGAAGGCGCTGGAGCTGCAAGGCTCAAGTAAGGAGTCTGATGGCCAGAGCAATGGAGCTGAAGAGGAGCAAGAGCTGGACTTTCTGCAAGGTGGAGAGGATACGTCTCAAGAATACAAAAGTCCCACCTTAGTTTCCCCTGACTCCGATTTCCCAAACGATAGCTTGGAAACTATCGCAAATGAACAAGTGTCAGGTGGCAATTGCAGCAGCACTGATATTAATGTGAAGAAGGTGGTCTGCACCCTGGCAGCAGGAGAGAGTAGACCTGAGCTGTTGAACTTTGTGTCAGACTGTCCAACTGGCTCAGCAATGACAGAAAGCCAACAAAGAGAGGAAATGCCAAACACAAAGAAGCAGTCAAGGAAGGAGCTAGACTCATCTCAGGAAATTAATCCTGCGGGGGACGATGGCAGTGAGGAACCGCATGATGTAATAAGTGATGCTGAAGAGGTCAGATGCTCTGAGGAGCACTTGAACCTTCATAACACTCTCCAAAAGCAACCAGAAGCTACTGAAGACACTAAGTATATGCCTTTGAGGAACCAGGACCGGAAGCTTAAGCAAAGCCGACGAGCAGGAAAGCAGTGTAAATTAGCTCTTACATTCACAAATAACAGCCCCACGTCTCCTAAATCAATGACGCTATCTCCCCAGATACCCCAGTTTGATGATCCCACTCTGGACTTTGTATCAAAGTGTGTGACCAGCCTCTCAACACAAACCACACCACAAGATTTTGTCTTGCTCTGGAAGGTCGATCGACAAACCGCTGATGTTTCTGGAGTGAAGGTTTTTCAGGGGAATTCTTTCAACTTTAAACCAAAGTCTGCAGCTTTCCCCCGGCCTCAGGAAGTGCCCTACAGAGTTGTACATGATAAAGGTGCACAGGTGGACGAATGCGAGTTACACAgtgatgacaaattaaaaaacctAATGATCCTCAGTTCACACTTTaaatttgtttcatttgaaatcctGAAAGACTTGTATGAGAAATGCGACTATGATATGGAGTGGGCTACGAATTTGCTCTTAGACTCTGGTGAACAGCTTTTCAAAGATGATGAGGTAGTGTGTTCTAACCAGGCAAGTGCAGCAACTGAGGTGTTATCCACAGCTGGTTGCAATGCAGATGCCTCTTCTAGCTGCCCTGAAGAAATGTCACCAGCCCTTACTGCCACTGATGATGAACATTTAGGAACCCTTGTAGAAACGATCAGTAATGATATTGTGGGTCCCACCCAGGAAGGGAAACCAAATATTGAGGAGGGACAATCTTCTCCAGAAGAACATTCAACTGGGAGCTCTGGTATTGAAACAGACATGGTCCGCAGTTTGGAGGACTGTCAATGTATGCTGCCTGAAGACGACAAGCATTCTGCCAGTCAGTCCACTGGGGAGGACAGTACCAATGAACAGCCTTTGGAACCGAAGCAAATGGAGGTGGACCATGACTCAGAAGAGGAATCAAAGACCCATAATCAGAGTGAACCGTGTAATATAAGACAGTGTGATGAGGATCTGGGAGCTAGTCTGAATCCTGCAGCGTTGGGGGAGGTCTCTGGTGGAGAAGAAGGGGATTGGACCGAGGCCGACAGTCTGGCTTTTGCAGCTTCGTTTTTACGTCTGTCTGATCCAAAGAAGGAAGACAGTCCCACCAAGAAGCCTCGAGAGAAGCCTAGGCATTCACTCGATATCCAGTCCTTAGAGCTGCGCTTGCCTGCGGAATTGGCATTTCAGCTCAGCGAACTCTTCGGCCCAGTGGGGACTGACCCAGgtTCTTTGTCTTTGGAAGACTGTGTTGTTCAGATTGATCTGAACCTTGCTAAACTCCTACATCAGAAATGGAAGGATACTATTCAGGAACGGCAGAGACAGGAGGCTCTCTCTTACCAGCTGCTTGAAGAAAGTGCCATGTTGTGGAGTGACCCCCAGTCTGACCGAGCGAATAGAGTTGCATTGGAGACCTCCGATGGGATTCCCTTCATGGACCATTGGAGTGCCCAGATGCCCCTTGTTTCTCTCAGGAGCATCATGTTGGAGGAGATGGCCCTGCAGGAGTATGCGGAGAAGTCCAAAATTAACCAGGACCTCGGCAGAAAGGACAGCGCCGCCCTGCTGAAAGAGAAGGAGCTTTACAAGATGTTTCCCACCATCGACCGGCACTTCCTTATGGATATCTTTAAAGACAACAACTATTCTCTAGAGCAGACGGAGCAGTTCCTCAGGTCCGTGCTTGACGCCGGCCCCGTGAAGAACGTTATTGCCCAGGACGTGGGCAAGCACAGCGAGGCCCAGAGACCTGGCGTGAAAGAGAAGAAGAAGAAGGTGAAAGAGGCCGAGGTGGCAGTTCAGTTCCAGGACACCGAAGACCCCGACTACGGCGACTTCCGAGCAGAGGCCCTTCTGCAGCACCGTAAACGGCAGGAGTGTTTCTGCAAGGCAGCCGAGGCCTACAGGCAGGGCAAGAAGGATGTCGCCACCTTCTACGCACAGCAGGGCCATCATCACGgccagaaaaagaaagaggcaAATCACCGGGCTGCCATGCGGATCTTTGAGCGGGTCAACGCCTCCCTCCTGCCACAGAATGTCCTGGACCTTCACGGCCTGCACGTGGACGAGGCCATCCACCACTTGAAGGATGTGCTGCAAGACAAAATGGCAGAGTGGCAGCAGAACAGAGGTAAACCTCACCTCTCTGTGATCACGGGCAGGGGAAACCGCAGCCAGGGAGGAGTCGCTCGCATCAAACCCGCCGTCATCGATTACCTCACAAACCACAACTTCAGGTTTACAGAGCCAAAAGCAGGTCTCCTTGTcatcttttttaataaatga

Function

GO: NA

KEGG:

id description
K15720 N4BP2; NEDD4-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116575 lncRNA downstream 122761 24505382 ~ 24505610 (-) True G93434
TU116522 lncRNA downstream 326391 24301420 ~ 24301980 (-) True G93399
TU116513 lncRNA downstream 361884 24265372 ~ 24266487 (-) False AMCG00017819
TU116452 lncRNA downstream 582002 24044194 ~ 24046369 (-) True G93355
TU116446 lncRNA downstream 590761 24034696 ~ 24037610 (-) True G93350
TU116666 lncRNA upstream 27167 24677165 ~ 24679900 (-) True G93500
TU116683 lncRNA upstream 75940 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA upstream 78844 24728842 ~ 24730222 (-) False G93509
TU116771 lncRNA upstream 272469 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 297660 24947658 ~ 24949136 (-) True AMCG00017839
AMCG00017828 mRNA downstream 16364 24611429 ~ 24612007 (-) True AMCG00017828
AMCG00017827 mRNA downstream 31582 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017824 mRNA downstream 60342 24440536 ~ 24568029 (-) True AMCG00017824
AMCG00017819 mRNA downstream 357776 24264679 ~ 24270595 (-) True AMCG00017819
AMCG00017818 mRNA downstream 375287 24119477 ~ 24253084 (-) True AMCG00017818
AMCG00017834 mRNA upstream 35305 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017833 mRNA upstream 66452 24716450 ~ 24725692 (-) True AMCG00017833
AMCG00017832 mRNA upstream 82697 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017838 mRNA upstream 109383 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017840 mRNA upstream 149085 24799083 ~ 24839147 (-) True AMCG00017840
TU116215 other downstream 1306417 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1306417 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1306417 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5209015 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1362663 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1362663 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1454028 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1459062 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3453301 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile