RNA id: AMCG00017828


Basic Information

Item Value
RNA id AMCG00017828
length 579
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00017828
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24611429 ~ 24612007 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atGGCGTTGAACTCCATCAAGTGCGTGCTGGTGGGTGACTCAGCGGTGGGGAAGACGGCCCTGTTGGTGCGCTTCACCTCCGAGACGTTCCCCGACTGCTACACGCCCACAGTGTACGAGAACACGGGTGTAGAGGTGTTCATGGACGGCATCCAGATCAGCCTGGGCCTGTGGGACACGGCTGGGAATGACACCTTCAAAGGCATCCGCCCCATGTCCTACCAGCAGGCCGACGTCGTGCTGCTTTGCTACTCGGTGGCCAACCACAACTCCTACGTGAACGTGCGCCACAAGTGGATTGACGAGGTCAGGGACTACCTCCCCAGTGCCCCGGTGCTGGTGGTGGCCACACAGACTGACCAGCGGGAGATGGGCCCGCACCGAGCCAACTGCATCACCTCCGCTGAGGGCAAGAAGCTCGCACACGACATCCGGGCCAAAGGCTACTTGGAATGTTCGTCTCTTAGCAATAGGGGGGTGCAGCAGGTGTTCGAATGTGCGGTCCGGACTGCCGTCAACCAAGCCAAGAAACAATCCAGGAGGAAGCTTTTCGACGTGAATCagtgcaaaatattttaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07873 RHOH, TTF; Ras homolog gene family, member H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116575 lncRNA downstream 105819 24505382 ~ 24505610 (-) True G93434
TU116522 lncRNA downstream 309449 24301420 ~ 24301980 (-) True G93399
TU116513 lncRNA downstream 344942 24265372 ~ 24266487 (-) False AMCG00017819
TU116452 lncRNA downstream 565060 24044194 ~ 24046369 (-) True G93355
TU116446 lncRNA downstream 573819 24034696 ~ 24037610 (-) True G93350
TU116666 lncRNA upstream 65158 24677165 ~ 24679900 (-) True G93500
TU116683 lncRNA upstream 113931 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA upstream 116835 24728842 ~ 24730222 (-) False G93509
TU116771 lncRNA upstream 310460 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 335651 24947658 ~ 24949136 (-) True AMCG00017839
AMCG00017827 mRNA downstream 14640 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017824 mRNA downstream 43400 24440536 ~ 24568029 (-) True AMCG00017824
AMCG00017819 mRNA downstream 340834 24264679 ~ 24270595 (-) True AMCG00017819
AMCG00017818 mRNA downstream 358345 24119477 ~ 24253084 (-) True AMCG00017818
AMCG00017815 mRNA downstream 557497 24048822 ~ 24053932 (-) True AMCG00017815
AMCG00017826 mRNA upstream 16364 24628371 ~ 24649998 (-) True AMCG00017826
AMCG00017834 mRNA upstream 73296 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017833 mRNA upstream 104443 24716450 ~ 24725692 (-) True AMCG00017833
AMCG00017832 mRNA upstream 120688 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017838 mRNA upstream 147374 24759381 ~ 24788341 (-) True AMCG00017838
TU116215 other downstream 1289475 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1289475 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1289475 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5192073 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1400654 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1400654 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1492019 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1497053 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3491292 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile