RNA id: TU116638


Basic Information

Item Value
RNA id TU116638
length 2242
RNA type TUCP
GC content 0.42
exon number 6
gene id AMCG00017829
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24705270 ~ 24715730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCCGGACTCTGCGGGCTGGCGGCTCTGTTGTGGAGTGGCAACAGGCATCCTTTCCAGTGACTCGGAAAACGTCAGAGCAATGGCCGAGGGAGGGTTTGACCCCTGTGAGTGCATCTGCTCCCATGAGCACGCCATGAGAAGACTGATCAATCTGctgaGACAGTCCCAGTCctactgcacagacacagaatgCCTTCAAgaaaTGCCCGGACCCAACCCCTCGAGCACAGGTGACCTCACAGTGCCAATGATCATGATGGCTTGGATGGTGATCGCCCTGGTCCTGTTTCTGCTCAGACCAGCCAGCATGAGAGGGCCGGGAACTGTGGGAAAACCATCCAGCCCACATAACCATGGAGGTGGACCCCCCGCTCCCCCAGTGGATTAGACCAAGTGGTTGACCAGTATTCAGCAGCCAAGGATTCGTACGACCAAAACAGTTACTGTGACCTGGATACACCTTTGAAATGTTTACTCATCTTCCTAAAGTCAATATTATACCAGTTCTTTTCTCACTAGCACCTGTAGCAGTTTCTTAAACTCTTCGGTTAACCCGAACACCTAGAATTGGGGGGATGATCAACAGGAATACCAGTTGGGCATCGGACTGGAAGGTGTGAGGGTTTCTGCATTCAACATTCCATGACAACCTTTTCCTCTGTATGCTGTAACCCCATCAGAGAACCATCCTTGTGGGCATGAAGAAAGGAGAATTGGACATTTATATTCCTCCAACAGAGTGTGCTGTATATCTCATTTGCTTGTGAAATTGCCAATTGTGCAGTAGCTTGACCTCTTGCCAAGAAGCTTATTCTGGTGGTAGAACTGCCTGTATAGGCTTGTATGCAAATCCGATGCATGTAAACATTGAACTGTAGCACGGAAGGTAGTAGGACACCTTGCCAACCTGACCCCCTACCAGCACCAAATGTCATTGTTAGACCATGCAAAATGCTTCATGAACACGTAAgcatataattgtataagtgtACAATTtgtcaatatgtatttatatatacatatataatttataaaaacagtGGTTTCAACTTTAAATGTTCAGCACAGAAGAAGCTGGAATATTGGTAAAACCTATATTAAGAGCCACACCTTTTCCTGGCTCTAAAACTGAGTGAAAAGACTgaagataacatttttaaaaagcagacacAACATGCTGAGAGTATCTTGTCTGTATTCAGGCCCGTGCCTCCCCTCTTTAAACAAAACAGCGGTGGAAAAAGGTGGCTTTGATTTTGAAACGGACGGCCACAAAGGCAGCGTGGGAAGTAGACGTATCTGGTGCATAGATTTGTTCTCGATTCCCTTTGGTACAAAGCACAGCGTAACCTTTCCAAGGTCACCGGTGGGGCGTTAAGAAACGGAGGTGAATTCGGCAGGTTTACTCAGTGCCTTCGCTTTCATATGGACTGGTGTCATTACTGCAATGCAAATGATGCCTTCCTTACTTTCTCAAAGTGTCTAgatgtatagtgtgtgtatgtctccACACATTGTATATACtctcttttccattttcatttccccccccccccaaaccagactttcatatttatttttttagtatttgCACGTGATGCGGTTATGGATGCTGTGCGGTACTCAACTGTAGGGTGTAAAGGTTGTCGGAATACTTTCCAACTTTTtgaaattctttatttttcttaaatataaccACCTTTGAGCATTATGTAGCTATTAAGATAAACATCGACTATAACATTGAATATATTGCTGGTCAGTAATCTGCCTGTATTGGGATTGTAGTTTGGAAAAGGTGTATCCTTGTATGGAAATAATTAGTCAATGTGTGCCCTTGGTTTCAAGATAACTAGCACTTTAAATAACTGCAGCCATTGTCCCTTTTACCCCCAACCAGGagatataaaattataaaatgtaatattacagTTGAACTATTTTACCTGCCAAGAGCTTCATGGTGTTACAAAAATGAATACCAGAATAGTTACAAAAATGAGGGAAGCATTTCTTGGCTTGTTTTCCCATTAACAATACAGTTACAGTTTGTTCATGATCTTCAGCTTTTTATACAGATGAGGGGAGCCAACTGTATATATGCCAAATTTgtggatttgtttaattttgtgtagAAATTCTATATGTAGTGCCATTTGTGGCGTTAACTAACACTGTATCGGGTTACAAAGGGCTTACACTATGCACTTTcataactataaaataaatatgagtaATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116610 lncRNA upstream 76961 24626559 ~ 24628418 (+) True G93454
TU116614 lncRNA upstream 76961 24626559 ~ 24628418 (+) False G93454
TU116464 lncRNA upstream 593269 24109095 ~ 24112110 (+) True AMCG00017817
TU116451 lncRNA upstream 657611 24044178 ~ 24047768 (+) True G93354
TU116324 lncRNA upstream 884856 23818331 ~ 23820523 (+) True G93241
TU116788 lncRNA downstream 232370 24947991 ~ 24949268 (+) True G93588
TU116812 lncRNA downstream 334772 25050393 ~ 25052374 (+) True AMCG00017843
TU116871 lncRNA downstream 594081 25309702 ~ 25312347 (+) True G93651
TU116898 lncRNA downstream 692896 25408517 ~ 25409609 (+) True G93675
TU116911 lncRNA downstream 801680 25517301 ~ 25517637 (+) True G93688
AMCG00017825 mRNA upstream 25245 24651100 ~ 24680134 (+) True AMCG00017825
AMCG00017823 mRNA upstream 128197 24567601 ~ 24577182 (+) True AMCG00017823
AMCG00017821 mRNA upstream 273848 24403853 ~ 24431531 (+) True AMCG00017821
AMCG00017820 mRNA upstream 313174 24386275 ~ 24392205 (+) True AMCG00017820
AMCG00017822 mRNA upstream 330802 24369729 ~ 24374577 (+) True AMCG00017822
AMCG00017831 mRNA downstream 10988 24726609 ~ 24730164 (+) True AMCG00017831
AMCG00017830 mRNA downstream 25339 24740960 ~ 24758655 (+) True AMCG00017830
AMCG00017835 mRNA downstream 171642 24887263 ~ 24905777 (+) True AMCG00017835
AMCG00017841 mRNA downstream 257259 24972880 ~ 24973770 (+) True AMCG00017841
AMCG00017843 mRNA downstream 334688 25050309 ~ 25051390 (+) False AMCG00017843
TU115792 other upstream 3883432 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 3889833 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 5177086 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 5281700 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 5293389 19402086 ~ 19411990 (+) False AMCG00017710
TU117380 other downstream 3927109 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 4717791 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 7691808 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 7745677 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 7792069 32507690 ~ 32601449 (+) True G94857

Expression Profile