RNA id: AMCG00017832


Basic Information

Item Value
RNA id AMCG00017832
length 4167
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00017832
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24732695 ~ 24739501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATAAGGCAGTCCAGCAGTCCACTCTTCAGATGGAGGCACCGCAGcaagccttttgttttgttgcttctGTTCTCTGTTGTTCTTGTGTGACTCCAGCCATTTTTGAGTCCCCCGGCTCGTGATGGGCACCCAAGTTTTGAAGAGACTCGTGTTCCTCCTTCTGTGCAGCTCTGGGGTTGTCCACGGTCTGCCAGGAGATGGGAGGGAAGTGTGGGCGGGACAGGTTCTCTTGAGCCCGGTGAATGAGACCCAGCTTTTCTTGCACCGCACGTTCCCCAAGGATTTCCTCTGGGGGGTGGGGAGCGCTGCCTTCCAGGTGGAAGGGGCTTGGGACCAGGATGGGAAAGGTCCCTCCATCTGGGACCACTTCACTCATTCTCGCAGCTCCCGGTTTGCCAAAGCCACAGGTGACACTGCCAGCGACAGCTACAGGTTGTGGGAAGAGGACCTGGCGTCACTGAAGTTCTTAGGGGTACGCTCCTATGGGTTTTCCATTTCGTGGCCCAGGCTATTTCCAAACGGGTCAGTGGAAGTTCCCAACAAGAAAGGAGTAGAATACTACAGCCGACTTCTTGACCGTCTCAGACAGGAAAACATTGAGCCTGTAGTCACTCTGTACCACTGGGACCTGCCCCAGGCACTGCAGCAGAAGTACGGTGGCTGGAAGAGTGAAGCACTGGTAGATATCTTCAACGACTATGCTGCGTTCTGTTTCAAGAGCTTCGGGAGTCGTGTGAAGTACTGGGTTACAATACACAATCCCTATCTGGTCGCTCTGCAGGGCTACGGAACTGGTCAGCATGCTCCAGGGGAGGCAGGGAACTCCACAGCTGTCTTTACTGTGGCGCATAATCTAATCAAGGCCCACGCTAGAGTTTGGCACACATATGACGAGCAGTTTCGAGACCTCCAGAAAGGACTGGTGTCCATAGCTCTGGGATCCCACTGGACTAAACCATTGAGGGGAAAGGTTAACAACTTAAGCATTGAACGCTGCCAGGAGTCAATGGAGTCTGTTCTTGGATGGTTTGCAGAGCCCATTTTTGGACAAGGTGACTACCCTGccaacatgaaaaaacaacctCGAGGAATTCTGCCTGTCTTCACAGAAgcagagaaaaaatacatcaaaggGACAGCTGACTTCTTTGCCTTTGCATTTGGGCCCAACAACCTGAGACTAGCGCAGAACTTGGCAAAGTTGGGCCAACAGGTCTCCCTTAACCTAAGGGAGGTCCTGAACTGGATCAAACTGGAATACAATAATCCCAGGATTCTGATTGTGGAGAACGGCTGGTTCTCGGATGCCAGGGTTCTGACGGAAGACACCATTGCTATATATCTGATTAAGAAATTTGTCAATCAGGTTCTGCAAGCCATTGTCCACGATGGTGTACAGGTGTGGGGCTACACAGCATGGTCCCTCGTGGATGGTTTCGAGTGGAACTACGGCTATACAATCAGAAGAGGGCTGTTCTACGTGGATCTCATGAGCAGAGACAAAGCAAGGATTCCCAAATCATCAGCCACCTTCTACAAGCAGTTCACCGATCCTAACCTCTACTTGTGGAACATCTCTGGCGATGGCACTCTCCAGCCCGTGTCTGGGACACAGCTGAAGACCCGCGGGCCGCAGTGCACGGACTTCCTCACCCTGCAGAGGCACCTCCACCTGGTGCAGACTACGAGGGCAGGCCACTACAGGTTTGCCATGAACTGGTCCCTCATCTTACCAAATGGCGACCTATCAGCCATCAACACAGAGGCCTTGAGATACTATGGCTGCGTGGTCACTGAGCTTCTGAAACGCAACATCCAGTCAACTGTGACACTGTACTACCCCACGCACCATCACCTCCTGGGCCTCCCTGCCACTCTGCACGATGCAGGAGGCTGGCTCAACCGGACGACCGCCCTCGCTTTCCGGGACTACGCCGCCCTGTGTTTCAGAGAGCTGGGCCCATGGGTCAGGCAGTGGATCACCATCAATGAGCCAAACCGTCTGAGCCACGCCTACAACGTCAGTAGCAGTGATGCGTACACTGCCGGGCACCACCTGGTCCTGGCACACGCATTGGCCTGGCGCCTCTATGACAAGAACTACAGAGCCCTGCAGCACGGCCTGGTGTCCTTCTCCCTGCATGCCGACTGGGCTGAGCCCGCCAACCCCTACCTGGAGTCCCATGCTGCTGCCACCCGCAGGCTGCTGCTGTTTGAGCTGGCCAGCTTCCTGGACCCCTTCCTTGGCAACGGAGACTACCCTGCGGAGGTGCGCGCCCACCTGCAAGAGAAGAACAGGGCCGGCCTCACCCGGTCCTCCATGCCTCGCTTCACCGAGGCAGAGAAGACGACTGTCCAGGGGTCGCTGGACTTCGTGGCCCTGAACCACTTCACCACCCGCCTGGTCCGCCCCCACCGCATCAATGGCAGCCTGCCCAGAGATGACCATGACTGCGAGCTGATGGCGGACATCACCTGGCCCAGCTCGCCTATGGGCCTCCCAGTGGTGCCCTGGGGGATCCGCAGAGTGCTGAACTGGGTCAGGGACCGCTACGGGAACAGCATGGGTCTTTACATTATGGCCAGCGGCACGGATGACAGGTCGCTGGACAATGACCAGCTGAAACAATATTACATCAGAAACTACATAGAGGAAGCCCTGAAAGCATATCAACTGGATCATGTCAATGTGAAGGGCTACTACGTTTGGAAGCTACAGGACAAGGACGCCCCACAGTTTGGGCTGTTTAACTCGCTACACTTTCAGTCCAGTGCCAAGTCCTCCCTCAGCACTTACAAAGAGCTGATCATCAACAGAGGCCTCCCCTCGGAGACGCACACAGCCACCTGTGAGGACACAGAGCACAGGAGCAGCTGCGCGGTGTGCCTGCTAGTCCTAGAGAGGAGACCTTTCTTCTTCTTCGGGGCTTGTCTCGTCCTCATGCTGTCACTGCTTACTGTGGTGCTGGTCACTGGCAGAAGGAGACGAGGGAAAGCGAAACGCAAACGGCAGCCCCACCTGCGATGGGACAGAGTGGCCCTTCAGCGTCTGAGAAGTCCTGTGCACAGTAGCTGCCTAAAATAGAACTGAGCAGAGCTGCGCTGATAACAAAATGCACTTAGAACTCCAGGGGTTTGGAAAGAAGACAACATGAGCACCTTTCACACTAGCATCCTCTACCCAGGTTGATCCTACCCATGATACACCTGAAGTGGGTCAAGTATGCACTTTCACATTACAATTTCAGTACATGGGTTGGATACTGGCAGTGAaggaaatacacaaaatacacaaactcaGCTCAGATCAGTCCTGGGTGACCCACCTCCTGCACGCTTTCTACCCATGTAAATGCCTGCACACTAATGAAAAGCATATCCCACGTTGAAGTGTTAGTGTGAAAGGGACTATACAGATGCTTGTTCTGCAGCTACTTGTGTTTAGAGGAAAATTTgaaattttcttttctttttcttgagCAGAGTTTCATAGTGGATGGCCCATTACAGCACTTTTATGATAATTTCATTATCTGCACTCACTTAGCAAGCGGACTACAACATTAGTCTGTTTTGTAATCTGTGTACTTTTAGTCAGCTTTCTACTGAGCTAAACTACTGGAAGCAGTTTTCTTTCTGGGAAAATTCTGTCTCTGGACACACATACTGTTTCGCTATGTTTCGTAGTTGTAGGCCAGCTATGTGAACATGATGTTATTGAATTTTAAGATTGACCTAAATACATTGGGATTTCACACTTATGTACCTCCGTTTACAACAAGGCAAAGATGTTTTTATGGCCACTATTTTcagaacagtttaatttattccCAAGCTCTGTAAATCCAACTATATCAGAATTGTTGACATTCAGCATGTTATGTgctaaaaaaaatgatatacaaaACTAGATTTTGCCCTATAAAGAGCAAAACAACAATCATCCTTGttttattgtggtttgtttttttctttctgtgctttGTATTAATTCAACAGGGCTGTGTATTCTGTGTTGGATTCCTTTGGCACACTCTGATGAGTAATCCATTTCTCATTCAACCACTGCATGGTATAATTAAGCTATGAATTGATCTgtcattgtgtttgtatttcgTGACaagtgaatgaaaataaaatacagtaatggTGTATTTATAATTA

Function

GO: NA

KEGG:

id description
K22404 KLB; beta-klotho

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116683 lncRNA downstream 2473 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA downstream 2473 24728842 ~ 24730222 (-) False G93509
TU116666 lncRNA downstream 52795 24677165 ~ 24679900 (-) True G93500
TU116575 lncRNA downstream 227085 24505382 ~ 24505610 (-) True G93434
TU116522 lncRNA downstream 430715 24301420 ~ 24301980 (-) True G93399
TU116771 lncRNA upstream 182966 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 208157 24947658 ~ 24949136 (-) True AMCG00017839
TU116793 lncRNA upstream 210467 24949968 ~ 24950248 (-) True G93591
TU116811 lncRNA upstream 268183 25007684 ~ 25009604 (-) False AMCG00017844
TU116851 lncRNA upstream 367301 25106802 ~ 25107082 (-) True G93639
AMCG00017833 mRNA downstream 7003 24716450 ~ 24725692 (-) True AMCG00017833
AMCG00017834 mRNA downstream 31646 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017826 mRNA downstream 82697 24628371 ~ 24649998 (-) True AMCG00017826
AMCG00017828 mRNA downstream 120688 24611429 ~ 24612007 (-) True AMCG00017828
AMCG00017827 mRNA downstream 135906 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017838 mRNA upstream 19880 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017840 mRNA upstream 59582 24799083 ~ 24839147 (-) True AMCG00017840
AMCG00017836 mRNA upstream 164281 24903782 ~ 24918826 (-) True AMCG00017836
AMCG00017837 mRNA upstream 188670 24928171 ~ 24942633 (-) True AMCG00017837
AMCG00017839 mRNA upstream 206594 24946095 ~ 24949042 (-) False AMCG00017839
TU116215 other downstream 1410741 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1410741 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1410741 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5313339 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1273160 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1273160 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1364525 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1369559 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3363798 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile