RNA id: AMCG00017833


Basic Information

Item Value
RNA id AMCG00017833
length 1808
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00017833
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24716450 ~ 24725692 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTTAGTGTGTGTGAACACGGTGACAACCCCTGCCAGCGCTGTCCCTCCACCGGCAGGCAAGAAGAAAGAGCTGCTGGATCATGGGCCTGACCTGCAGGACTTCATATCCGGGGAGCTGGCAGAGAAGAGCAACTGGGATGAATATAAAGGCACCCTCAAACGACAGAAAGGAGAGAGGTTAAGGCTGCCTCCCTGGCTAAAGACCGAGATTCCCATTGGGAAAAACTACAATAAGCTGAAGAACACACTGCGGAATTTAAACCTGAACACAGTCTGTGAGGAGGCGAGATGTCCTAACGTTGGGGAATGCTGGGGTGGGGGAGAGTACTCCACCGCCACAGCTACAATCATGttGATGGGGGACACATGCACCAGAGGCTGCAGGTTCTGTTCTGTGAAAACGGCCAGGAAGCCCCCGCCCCTGGACCCCGAAGAGCCATTCAACACAGCCCAGGCCATCGCGCAGTGGGGGCTGGACTACGTGGTGCTGACATCAGTGGACAGAGACGACCTTGCTGACGGAGGTTCGGAGCACTTCGCAAAGACAGTGTCTCACCTGAAGGAGAGGAGTCCAAAAATCCTTGTGGAGTGCCTGACTCCTGACTTCAGAGGGGACCTACAGGCTGTGGAAAAAATCGCACTGTCGGGATTAGATGTCTACGCACACAATGTTGAAACTGTCAGAGAATTGCAAAGGCTGGTTCGGGACCCGCGGGCCAATTTCGACCAGTCTCTGAGTGTCCTGAAGCACGCAAAGAAAGTTAAGCCTTCCCTGCTGTCAAAGACCTCCATCATGCTGGGCCTGGGGGAGACGGACAACCAGGTGTATGCAACCCTGAAAGAGCTGCGAGAGGGTGGAGTAGATTGTCTGACATTGGGACAGTACATGCAGCCAACCAGACGGCACCTAAAGGTTGAGGAGTATGTGACGCCAGAGAAGTTCCAGCACTGGGAGGATGTGGGGAAGGAGCTGGGCTTTGTGTACACAGCCAGCGGGCCTCTGGTGCGCTCGTCCTACAAAGCAGGTGAGTTCTTCTTGAAGAATCTGATTGAGAAAAAGAAGGCAGAGTCGTCTTAATGAGCCACCAGGTGATCCGGACAGCTTCGCCCCAGGTGTCTCTGAGCAACACACTACTTCACCACCTCTGATGCCCTGTCTGTGACCAGAATAATGTAGTACAGAATAATTTCTGTGGACAGTCTTCCTGGCTCCCAATCTTGTAAATGTCACCCAAACTTCTAGAGTTTAAAAGCTTAGCTGTTGGGATTCAGCCGCTTCTCACGAGTTGGCTGATAATTGGAGTATTTTGAAATTGGATACAATTGGAGTGTACCAATATTAGGGCAATTAATATTTGATTCCTCTCTGAATACCTTGCTGAACAACACTGTAGCATTAGTATGTATAATCAAAGACCAGTGTGCACTGATAAGGCAAAGCAAGATCATCAGAAATTAGATTCTGTGTGGACATGAGGGGGATGGAAAACTTAGGCTGACCTACCTAGATGAACCAGGACTGTGATTCGGTGTGCCTTCATGGGCATTTAATTGAAGTGAcgaaaaaaaatagatattattTGATACCCTGCTCATACAGGATAGTTTGTCCTTTGATATCTTCCTGCTCTGGGCTGTGTGGCAGATTTGTAGAAAATGTCAAGCAGAAGTTTTAACTGTACAGAATGTCTTGTAAAGTCTTTTTCTGTCTACTACAGCATTTATGACTGAAATCAACTGtactataattttattttatgatctgTAAGTTccctttgaaatattaaaatacttaagtAGTTT

Function

GO:

id name namespace
GO:0009107 lipoate biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016992 lipoate synthase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K03644 lipA, LIAS, LIP1, LIP5; lipoyl synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116666 lncRNA downstream 36550 24677165 ~ 24679900 (-) True G93500
TU116575 lncRNA downstream 210840 24505382 ~ 24505610 (-) True G93434
TU116522 lncRNA downstream 414470 24301420 ~ 24301980 (-) True G93399
TU116513 lncRNA downstream 449963 24265372 ~ 24266487 (-) False AMCG00017819
TU116452 lncRNA downstream 670081 24044194 ~ 24046369 (-) True G93355
TU116683 lncRNA upstream 246 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA upstream 3150 24728842 ~ 24730222 (-) False G93509
TU116771 lncRNA upstream 196775 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 221966 24947658 ~ 24949136 (-) True AMCG00017839
TU116793 lncRNA upstream 224276 24949968 ~ 24950248 (-) True G93591
AMCG00017834 mRNA downstream 15401 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017826 mRNA downstream 66452 24628371 ~ 24649998 (-) True AMCG00017826
AMCG00017828 mRNA downstream 104443 24611429 ~ 24612007 (-) True AMCG00017828
AMCG00017827 mRNA downstream 119661 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017824 mRNA downstream 148421 24440536 ~ 24568029 (-) True AMCG00017824
AMCG00017832 mRNA upstream 7003 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017838 mRNA upstream 33689 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017840 mRNA upstream 73391 24799083 ~ 24839147 (-) True AMCG00017840
AMCG00017836 mRNA upstream 178090 24903782 ~ 24918826 (-) True AMCG00017836
AMCG00017837 mRNA upstream 202479 24928171 ~ 24942633 (-) True AMCG00017837
TU116215 other downstream 1394496 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1394496 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1394496 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5297094 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1286969 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1286969 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1378334 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1383368 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3377607 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile