RNA id: AMCG00017836


Basic Information

Item Value
RNA id AMCG00017836
length 5095
RNA type mRNA
GC content 0.43
exon number 14
gene id AMCG00017836
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24903782 ~ 24918826 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGAGTGCACTGACGTCACCCACAATAACAGCAGGGCTGCCTGCCGACGTGgcggaggagagggaggagagcgGAGCGGCCGGGTGCGACAGGACTGCTGCAAAGAAAAATGTCGCAGCACGATGGGAGCGATGGCGGTCTTCCGGACCTCAGCGGGCCTGTCTTGGAGCCGCACGGAGACGACGAGCCCTGTCTGACGGACACAGAACCGAAAGACAAACCATCAGAGCCCGTGACGGATACTCTGCCGAAGGATGAGAAGGATCAGCTGCCCGGCGGGATCAATGAGCCCCAGACAGAGGAAGCTCCCAGGTCCCCAGAGGATGTGGCAGTGCCGGGGGCTGAGAGCACAGTGCCCATGGAGACAGGAGGGGCAGGCTGCCAGCTCAGTCACGAGTGCCACGAGTGCCACGAGTCAGTGAGTCTGGAGCCGGACGCTACAGGAGACCGGACTGGGCCAGAAGGAGAGAGTGAGCAGGAATCCAAAGACAAGAGCTGGGGAGGCTGGGGCTCCTGGGGTAAATCGCTTTTGACCAGTGCGACCTCCACTGTGGGGCAAGGGATCAACGCCGTAAAGGAAAAGGCCGGAGTGACTTTAAGAAGGCCGAGGACGACCTCCGCATCTGAGGAGGCCAAGGAGGCAGAGGCCAGTAAAGAGGGAGTGACAGAAGCAGAGGATCTCCAAGACCAGCTGGaatgcccccccacctccccgtCCTCTGGGTCCCGAGGAGTGCTGTCCACCATTACCAGCGCTGTCCACAACACAGGAAAGTCTGTGATAACAGGCGGGCTGGATGCGCTGGAGTTTATTGGGAAGAAAACAATGACTGTCCTTGCAGAAAGTGACCCTGGCTTTAAGAAGACCAAAATCCTCATGCAGAGGACCGTGTCACTATCGCAGATGTTAAAGGAAGccaaagagaaggagagggagaggatgagCAGTCAGCTGGTGAGCGAGCCCACGGTCCACTACGGGATTCTGTTTGATGACTTCCAGGGACTGTCCCATTTGGAAGCTCTGGAAATCCTGTCTAATGAGAGCGAAGCAAAGGTTCAAGCTGTCTTAATGTCACTAGAGGAAgagcagctagagtccctgaaGAAGGAGCTGATTGCCATTAAAGACATCTTCACAGAGAAGGACTTTGAAGAAGaagtggagggagaggagaaagTGCTGGTCGAGCCGTGTGCTGTGTCTCCAGCTGATGACGGAGAGGAGTTCGTCAACGTTGTCACGGAGCTGCTCTTTGAGTTGCACATCGCTGCCACGCCAGACAAACTGAACAAGGCCAGAAAAAGAGCGCATGACTGGGTAAAAGAAGTGAAATCTTACACAGAAACATCTGCCGATGAAGTGGcaacaaaagaaagcaaagatCTTGGTGCTGAAGAAGATAAAGAAGAGAGCAACACAGAAGAGAGCAGTCTGAAATCGGTAGAGGGTATCTACGAGTCCGCGGTGGGCAGCCTGGCAGAGGTCACGGCGCGGGGCATTGAGCAGCTGCACAAGGTGGCAGAGCTGATCCTGCACGGGCAAGACGTGGAGCGTCCCGCGGCACAGCAGGCGCACATCCTGGCCAAGCTGACCAGTGCTATGTGCTCAGAGGTGTGTTCCCTGTCTAAGGAGTTTACTGACACGCTGGTGGCTGCAGGGagCAAGCAGAAAGCTGAAGAGTTGAACCCCCTGGTAAACAGCATTATACTGGAGGGATCAAACAGCACCACCTACATTCAGAATGCATTCCAGCTGCTTCTCCCAGTGTTGCAGATCTCCCACATCCAACTGACCACAAGCAAAATGGACAGTGAGCTCTAGCCTTGTAGAATCTACAGAATCTTGCTTTAATTCATGGGAATTCcaccacagaaaaataatatttagaatAGAATCTGCACTATTGAGAGTGAATATAATTAtctagtctgtgtgtgtgttaaagagATATACAAGATAAATTATTAAACTTCCTGAAGTGCTTTAAAGTTTACTAATAAGTGTCAGTGGGACACTTTGATGCCTTATTAGTGGGGCTGTTGATgttccttttctctctttacAGTGAGACAGTTAAAGACACAACAGAACTACTGTTGGCAGGTAGATAATTATTTATGACAAAAATGTTAggcattaattattaattgttgcTAATCAATCTGTGAGTTTCCACCGGGGTTCTGCAGATGAGAGACCATGTAGCTTCACAAATCCATCACGGAATGCAAAACAGTGAAACCTAATCTGTGTGGTTGGAAATGAAGCTTATTgattaagaaaaggaaataaagtaGCAGGGCAACCGTTAAACATGCCAATCACTTGCATTTCAACACAAGTTTCTTTCCTCTTGTTCGCCCCACTGCAACTTTTGCATGAATTCCTTAAATCTCTCCCTTTGCGGTTTAGACGAGGAGGTCTGCATTTCAAATCAGGAAATTATTTCTATATCCACTTAAAAATAGGAGGATAAAAAGACCAAGCGAAAATGATTTGGAAAAGGTTCATAAAGGGAAATGAAGAAATGGCTTTACTATGCTCACCCTTTAGGGGCTGCCATTCAGTCTGGACGCAGGTGCTGAGAATCCCAGTCCTGCTCCGACAGCACCATTACTCTCAAGCCCCTCCAGTTCAGTCCCTACACTCCGGTTTTGTCACTTTAGTGCTGCTATATATAATAGTCCTGCTTATGCCACTAGCCTAACCATTTTACATGTAGTATATTCACAAATTATACTGTATAGTGGTCTGTCCAACATGGATGCTCCTGTTCAATTCAGGACATCAGGATTAAACTTCTAATATGTCTGATGCTtgtttgcaatatttaaatacaagcGAAGGCActatttaaagcttttaaatgtttaaattgaagTGCTGCTGTGGTTAagtagtattttgtatttttccatggTTATACAAATTTAATGTTGAATTTTGACACAGAATATGAAACTGAGAGGGTTTATTTTATCAGTGTGGTTCAGTGCAATTGCAGGACCACAGCCCCTGTGCTCCTGCTTGTTTTCTGTGCGTGTTCAGTCCGATTGTAACcaattatttgttaattgttataattatcattattaaattcttttttaattatttaaaaactggtCAAGTATTAACTTGTAAAGTATTAacattgtgttgtgctttggtcATACACTTTTCAAATAGAAAATTCACAGAAGGCCTactatgatttttttctttcagtcacTATTCACAGAGATGTCCTTAATCACAGTATATGCAAATCAGAACACTATTGTATAGGATGAATTATACTATTACAAGCTAAAATACTTATGTTGTTCATGATTCATGTATAGGTACAGAAGTAACTCCCATCAATACACTTTTGAATTATGTGGTGCAATCCcataaactgtttatttaatcagaaaACTAACAATGATGTGAGCAAGCGCCTCCTATGCGGTCTTGAATATCCTTGTACTCAACTTCTGTGTTTTACATTCTGTTGATGATCTTTGCgctgcattttatttacttctatAAACTTCCCTCCGTACATGAATGTGTTAAGTACGATTAACAATGGCTCCAATACTTAGGGATTCTCTTGTATTTGCCTTGaactttaaatgaatgtaattttcATTCTCATTAAAATGGCATTTAGGTCTGGGGTTTGTTAAAATATGGAAAGCATGCTTTTGTTATCAATCAATGCAGCTCCACATTTACTGCTTAATAAATTAAGTGAAATAAGGAGCTAAAACTTAAAACTTTCATAATAGTATGCAGTACAGAAAAAAGGGattttaggtttttattattCAGAATTCGAGTTGACATACCAGACATGTTGTTCATTTTTAAGTGCCCTTATGTTAGAGATGTGGTcctcaaaacataacaaatattgtaataagGAGTATTCCCAAAATGCTTGTGCATCCCAGAAATAAAagtagcaacaacaaaaaaagttgtgttttttgttttttaattagattgaaATACTATGAAAGTATACAATATAGGCAGGCGATGAGCACACAGATATATTCTCAGGTCTCCAGTCCTGAGGGTCAGTATTCAATTTGACAATCGACAGATATGCCAAAGCATGTACATCAACTAGAGTACAGCTGCTATTATTTACTCATTGCTTACAATACAACTACGGTTCAGTGTGATTGGCCAGGTTTACGTTAACCATGCCCCCAAGAAACTAACCCCCTCACTTGCCACCGTGAAGTTGCTTAGTGCACTATTGACAAAAACATGAAGCTAGAATGGAAagtataaagtatttttaatagttCTGGATATGGGTGTCactctttctttttgtaatattaCAAGAATTCATTTCAGTATAGTACCAAGATAAATCATtcataaataagtataaaatgttgtattaacaCACAAATGTACAACTTCAGTCAACTGTTCTCTGCATTAGTCACAGTTCTCTACACATTGTTCATACGGGGGCAGTGGAGTAGTCGGCCGGCGGGGTGAAATGTCTGTGCCGAGTCCTTACTCCACTACAGACATGCAGGCGCTGTCACTcactgctgctgtctgtctgcaggACCCAACGAGAAAAGAAAGCaccacattcaaaataaatacatttgagtaTAGCATCAAAATGGTTAATACATGGTTCTTGTGAATATTAAGTTTGTGTGCAATAATAAAACTTCCCTGCTGTCACAAAGTACAGACACCCAACATTATTTCACTTAATTCTGCGGTTCAGCAAAGTCATGTCTAGCAGTTAGCATATGTTTTTGACAACTTCAGAATGTGTTTAAATTCTCTTCACAGTGGGGGGTCTATGCATCAAACTGTCATTTTTAGGCCTTTTGTACCTTCAGCTTGCAATTGCAGTTTTTTAATGTCAAACCGagtatgttgaaaaaaaaaacattaaattatgcTGAAGAAAACACCTAAATGTAGCTAAATGTGTTTGATTCGTTTTATGGTTGTAGTGTTTTTCCTCAATTACTGCTTACCATTTATGTtctatacatttgcataatctgCATTACTTCTGtctgtaataaaataaccaaaaaataaaacctttaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116683 lncRNA downstream 173560 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA downstream 173560 24728842 ~ 24730222 (-) False G93509
TU116666 lncRNA downstream 223882 24677165 ~ 24679900 (-) True G93500
TU116575 lncRNA downstream 398172 24505382 ~ 24505610 (-) True G93434
TU116522 lncRNA downstream 601802 24301420 ~ 24301980 (-) True G93399
TU116771 lncRNA upstream 3641 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 28832 24947658 ~ 24949136 (-) True AMCG00017839
TU116793 lncRNA upstream 31142 24949968 ~ 24950248 (-) True G93591
TU116811 lncRNA upstream 88858 25007684 ~ 25009604 (-) False AMCG00017844
TU116851 lncRNA upstream 187976 25106802 ~ 25107082 (-) True G93639
AMCG00017840 mRNA downstream 64635 24799083 ~ 24839147 (-) True AMCG00017840
AMCG00017838 mRNA downstream 115441 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017832 mRNA downstream 164281 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017833 mRNA downstream 178090 24716450 ~ 24725692 (-) True AMCG00017833
AMCG00017834 mRNA downstream 202733 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017837 mRNA upstream 9345 24928171 ~ 24942633 (-) True AMCG00017837
AMCG00017839 mRNA upstream 27269 24946095 ~ 24949042 (-) False AMCG00017839
AMCG00017845 mRNA upstream 46648 24965474 ~ 24986772 (-) True AMCG00017845
AMCG00017844 mRNA upstream 78718 24997544 ~ 25018212 (-) True AMCG00017844
AMCG00017846 mRNA upstream 156779 25075605 ~ 25080431 (-) True AMCG00017846
TU116215 other downstream 1581828 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1581828 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1581828 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5484426 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1093835 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1093835 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1185200 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1190234 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3184473 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile