RNA id: AMCG00017837


Basic Information

Item Value
RNA id AMCG00017837
length 3677
RNA type mRNA
GC content 0.50
exon number 18
gene id AMCG00017837
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24928171 ~ 24942633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATGCCTTGATTTGTATCCACAGGGCTCCTTCACTGCAGGAACATCCAGATCGTGCATATCTAATAAAATAGTATcttctgcatatttattttaatattattatgcacatttaatatatgttttgtctctgtaattcattttagaCCGACAGAAGACATCGTACAACAGCCGTGTGTTGTTTAGTTCTTAGTGTCGCACTTTCTAATTGTGGATCGTATTTCGTGCTGATTGCTAtgctttgttgtcttttttaatttactctGCGATGGATAAATAAACCACtgacacaatacaaacacaacctCCGAGAGACATGTCTGCGCAGGGAGACTGTGAGTTTTTAGTTCAAAGGGCCCGAGATCTAGTTAGTGAAGATCCATGGGCAGCAAAAGCCTGGCTCATCACGGCCCGGACGCTTTACCCTTCAGATTTCAATATACAGTATGAAATGTATACTATTGAGCGTAATGCGGAGAGGACAGCCTCTGCAGGGAGACTGCTGTATGACATGTTCGTAAACTTCCCTGACCAGCCTGTGGTGTGGAGGGAGATCAGTGTGATCACGGCTGCCCTGAGAAATGACGTCCAGGACAAACACGCACAGTTCCTGAGAGGCCTGTTTGAGACTCTGCCAGGCCGGGTCAGTCTGGGTGAGACACTGTTGGAGGCAGAAAGTATTGAAGACCAGGAGACACCAGTCAATTGCTTCAGGAAACTGTTTGTGTGTGACGTGCTGCCTCTCATCATCAACAACCCTGACATGCGCCTCCCTGCCAGCCTGCTCTACAAGTACATGCACAAAGCTGCTGAGTTCTACATCGGATACGTCACCCGGGGCCCCACGGCCGAGAGCCAGCTCCAAGTGTCTCAGGAGGCAGGCAGTCTGAAGTCCCCCACTGCACGGGGCTCCCAGCGCTACATCATCGAGGGGCTGACGGAGAAGTCCTCCCAGGTCGTGGAGCCGTGGGAGCGGCTGCTGGAGATCATGTCGGTGGTGGGCGTGCGGTGCGAGTGGCAGATGGATAAGGGCAGCAGGAGCTATGGGGAGATGCTGCAGCGTATGAAGGAGCTGGGTCGGTACCTGAGCAGCTTCGATGCCGATGCCCACGTGCGCTACAGGAACCAGGTGGTCTACTCCGTCATGCTGGTGTTCTTCCGCAGCGCCTACCAGTACGTCAGCGCCGTCCAGCCCACGCTCTTCCAGGGACACGGCTCCCCCAGCACTGTGCCATGGATCCTGGTGGAGGATTTGTCCTCAGTGTACAGCGATGCAGACCTCGACCGCAGCAAGCACATCCACAAGAAACGCAAGCTGGCCGATGGTCGAGAGAAGACCATGAGCTCCGATGACGAGGAGGTCTCTGGGAAGGGCTGCGGCCGCCACATCCTGGTCAACAAGACGGAGCTGCCCTGCTGGGCTGACATGCTGGAGAGCTTCAGGACAGCCAGGGAAAGCTGGGAACTGCTGCACTCGCAGGAGACGCTGGAGAACGAGTTCAACAGAATCTGTTCCTCCTGGAAGACAGACAGCTGGTTATGGTTACGAATATTCTTGACTGACATGATCATCTATCAGGGCCAGTACAGGAAGGCCGTTGGTAGTCTCCACCAGCTGGCTTCCATCCAGCTGCCCCAGCCACAGGTGGTGGCCCCCCAGAGCTCTCTGGAACAGCACCGGGCCCTGATCCAGCTGGCTTCCTGCCACTACGCCCTGGGGGAGTACAGGATGGCGTGTGAGAAGGTGCTTGAAGTGGTGAACAGCCTGGTTCCCCAGGTTCAGGAGGCGATCCGGACCGCTGAGGAGGTCCCCCGGGTCAGGACCAAATTTCGTAAAGGTTCTGACCTGAGACTTCTGCCCTGTACCAGCAAGGCCATCATGCCTTTCTGCATGCAGCTGATGTTAGCTTGCTTCAAGCTCCGCGCTTTCACCGAGAACAGGGACGACCTGGCTCTGGGTCATGTGGTTGTCCTGCTGCAACACGATTGGCCGCAGGGAGAATGCCTCTTCCTCAAAGCGATAGAAAAGATCTGCCAGCAGGGCAGTTTCCAGTACGAGAATTTCTTCAACTATGTGACCAATATTGATATGCTGGAGGAGTTTGCTTACCTGCGTACTACTGAGGGGGGGAAGGTGCAACTGGAGCTGCTGCCCAATCAAGGAATGCTCATCAAGAACCCTAGCCCTTCCATGGGGCTCCTACCCCAGGAGTTTATACCCATCCTGCCGCCTGGCGTACCGACTGCCGACAGGCACCACACCGTGACCCGCGGCATCACCAAGGGTGTGAAGGAGGACTTCCGTCTGGCCATGGAGAGACAGGTGTCGCGCTGTGCGGAGAACTTGCAGACCGTGCTCCACCGCTTCTGCATCAACGAAAAGATCATGCTCATCCAGTCCTTGCCCTGATCGCCAGGCTTGTCCTCCCCCTAAGTGATGGAGCTTCATGCAGAGTTTTACAGAAGTTGAAGACTCACTTAAAGGGTCTATGACTTGAGACGTCATGCCTTTGAGCTGCATGTACTGTCAGTTACCATGGAATTGCATCCTCTGTGTGCATCTGAAACTCAAACGCCATTACAGCAGAATTCTTGGCACCAGCTTAACTTGTGACAGACGAGACATTATGACGAacctctgactctctctctaaGGTTCTTGAGATGATGTCACAGTCTTTCCAGCAGACCGTAAACGAGAAACAAGACCACATTATTGTATTTCCAGCAGTGAAACTTCTTTGCTTTTGTAAATTTTTCCCCAAAGGATCTAGATCTCAGACTGTGTACttctgtatatttgtgtgtgactTCTCTTACTTGTTcaacttgttgtttttgtttaaaatagatGTCCTTCTGTGAAAGTTATTAACTCACTGTGCCTCTCTGTGTTGTTTGGTTACTCTCCAAGTGACTGCTTGTGGAATTGCATAACTGGGATTTTAAGCCTGTATTTTCTCTGgtttctttttcaattattatgtTATGCTTTGTATGCTGACACATGTATGGCCTTCCCCACAGTGTGGAGACAGATGGTATTACTTAGCTCAGGGGGACAGATGTTTGATCTGGACTCTAGACTCCAACAGAGATTCTAAATATGACCGAGAAATTGGATGGAGATTTTAACATCATGGATAGCATGGATTTGCCATGACAGATTATATGTCAGACTCAGGTTGCATTTAGAGATTTGTTGTGTTGGAGGAGCCAAGTCGAAGAGCAGAAAAGCCCGCAGTCCTCTGTGTTGGAGTGGGGTGCCATGTCCTGCCCCACCCCTATCCCGTGCCGCCCCAGCCTATGCTCCTGCACACACCAGAGGAAGCCAGCAGCACCACCGTGTGGGAGCCTTGAGTACAGCTTCTTATTGGAAAACTTAATATTACTTTATAATAGAGTATGGGGAATGGTTATGgaaagtataataatataataactaaaTCGGCAATCAGAGAGCGGTTTTTGAAGCGTCAGCCAACAGCAAAGACGCTAAAcaacttgtttctttaataattaTCATTGATACTGGCAGGTAAAATGAAATGGATATTGTAACCAGAATGTATTGAATtggtttgattaaaatatatttactttaattcaGAAAACGTTATCATTGAGTTCATATGActtattgctgtgtttctcaaccctggtcctagatgacccccc

Function

GO:

id name namespace
GO:0016180 snRNA processing biological_process
GO:0032039 integrator complex cellular_component

KEGG:

id description
K13147 INTS10; integrator complex subunit 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116771 lncRNA downstream 983 24922467 ~ 24927188 (-) True G93576
TU116683 lncRNA downstream 197949 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA downstream 197949 24728842 ~ 24730222 (-) False G93509
TU116666 lncRNA downstream 248271 24677165 ~ 24679900 (-) True G93500
TU116575 lncRNA downstream 422561 24505382 ~ 24505610 (-) True G93434
TU116791 lncRNA upstream 5025 24947658 ~ 24949136 (-) True AMCG00017839
TU116793 lncRNA upstream 7335 24949968 ~ 24950248 (-) True G93591
TU116811 lncRNA upstream 65051 25007684 ~ 25009604 (-) False AMCG00017844
TU116851 lncRNA upstream 164169 25106802 ~ 25107082 (-) True G93639
TU116853 lncRNA upstream 168257 25110890 ~ 25111090 (-) True G93641
AMCG00017836 mRNA downstream 9345 24903782 ~ 24918826 (-) True AMCG00017836
AMCG00017840 mRNA downstream 89024 24799083 ~ 24839147 (-) True AMCG00017840
AMCG00017838 mRNA downstream 139830 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017832 mRNA downstream 188670 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017833 mRNA downstream 202479 24716450 ~ 24725692 (-) True AMCG00017833
AMCG00017839 mRNA upstream 3462 24946095 ~ 24949042 (-) False AMCG00017839
AMCG00017845 mRNA upstream 22841 24965474 ~ 24986772 (-) True AMCG00017845
AMCG00017844 mRNA upstream 54911 24997544 ~ 25018212 (-) True AMCG00017844
AMCG00017846 mRNA upstream 132972 25075605 ~ 25080431 (-) True AMCG00017846
AMCG00017851 mRNA upstream 152565 25095198 ~ 25100631 (-) True AMCG00017851
TU116215 other downstream 1606217 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1606217 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1606217 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5508815 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1070028 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1070028 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1161393 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1166427 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3160666 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile