RNA id: TU116791


Basic Information

Item Value
RNA id TU116791
length 711
lncRNA type sense_over
GC content 0.47
exon number 3
gene id AMCG00017839
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24946095 ~ 24949136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGGAGACGAAGGCGGAACCCTATTGTTCCGAGACTGCGACTCTCTTCACTTGGTGACTGCACCGCTGTCAACTTCATTGACCAGAAATGGCAGACAAACCAGACCTGAAGGAGATCTCCGGCTTTGATAAGACCAAGCTGAAGAAGACGGAGACCAATGAGAAGAACACGCTTCCCACAAAAGAGACAATAGCACAGGAGAAACAGACCGAAAACTCCTAAGCAGCGGCGGTACCGGAGCGCAGCATCCTCTCCTTTGTTCCAGGAGCGCCCGCCTGCAGAACGGGCAAGAGAGGCAACACACTGGGGGACATGGTCAGCCGACGAGAGGACTGGACGGGATGTGGTCTGCGGGGCAAATGTCTTGGCACGGATAACGCCACCAATttgtacaaatgtttaaatcgATTTAATAAACGTAATGattagaaatgcattatttttcgACTCTAATTTGAACTTGGAACCCTTAAAGCGGCACGGGGAATCGATGGTTGATTTGCAAGGGCTGCCTGATGGGtgtgtaccaaaaaaaaaaaaaagggatgcAATATCTACAGGCGTCTTGGATTAAGGTTAATTGGCCGTTTTTAAAGATCTAATCCGCCACAAAGCCTCACTAGTTGGTAGTGTGCTTGTGAATTTGCTGCAATAAGCAGGTTTTCATCTCCAGTTAAACCCACATTAGTCAATTAAGACTTGACTGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116771 lncRNA downstream 20470 24922467 ~ 24927188 (-) True G93576
TU116683 lncRNA downstream 217436 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA downstream 217436 24728842 ~ 24730222 (-) False G93509
TU116666 lncRNA downstream 267758 24677165 ~ 24679900 (-) True G93500
TU116575 lncRNA downstream 442048 24505382 ~ 24505610 (-) True G93434
TU116793 lncRNA upstream 832 24949968 ~ 24950248 (-) True G93591
TU116811 lncRNA upstream 58548 25007684 ~ 25009604 (-) False AMCG00017844
TU116851 lncRNA upstream 157666 25106802 ~ 25107082 (-) True G93639
TU116853 lncRNA upstream 161754 25110890 ~ 25111090 (-) True G93641
TU116881 lncRNA upstream 423797 25372933 ~ 25381038 (-) True G93660
AMCG00017837 mRNA downstream 5025 24928171 ~ 24942633 (-) True AMCG00017837
AMCG00017836 mRNA downstream 28832 24903782 ~ 24918826 (-) True AMCG00017836
AMCG00017840 mRNA downstream 108511 24799083 ~ 24839147 (-) True AMCG00017840
AMCG00017838 mRNA downstream 159317 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017832 mRNA downstream 208157 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017845 mRNA upstream 16338 24965474 ~ 24986772 (-) True AMCG00017845
AMCG00017844 mRNA upstream 48408 24997544 ~ 25018212 (-) True AMCG00017844
AMCG00017846 mRNA upstream 126469 25075605 ~ 25080431 (-) True AMCG00017846
AMCG00017851 mRNA upstream 146062 25095198 ~ 25100631 (-) True AMCG00017851
AMCG00017850 mRNA upstream 151697 25100833 ~ 25105142 (-) True AMCG00017850
TU116215 other downstream 1625704 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1625704 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1625704 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5528302 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1063525 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1063525 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1154890 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1159924 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3154163 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile