RNA id: AMCG00017842


Basic Information

Item Value
RNA id AMCG00017842
length 6802
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00017842
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25053194 ~ 25073949 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGGTAGTCCATACGGAGCAGGCTGCCAGCGGAAAGTCTGTCTGGGGGAGAGGAGCTCCAGTCCCTGCGCTGCGAGCTGTTGCCAGGAGGCTAGCAGGCCAGTTAGCAGGAGATTGACGTAGGCAGAGCGGGGCGGCTGGACGCAGTCTCACGCATCCCCCGGCGGGGCGGCTGTTTCTTTTAACGCACGGCTGTAAACACAGCCTCGCTCGCCTGCGCCCGTAGACGCACAGCTGCGGGGACAAGCCCGACATCTGCCGTAGCCAGCACGGCGCCGACGACCGTGCAATGTCGGAGTTGTCGCCTTGAATCCGACGAGCCGGGCGTCTGCTCCCACCGGCGGCGCGGTGCGTTCCCGCTGCCGTCGCTGGAGGAGGGAGGTGCGGCGGAGAGCGGAGGCGCAAGTCCCGCTAACTTCTCCGGCTCCGGCTTTCCGCGCCTCGGGGCGAAGGAGCGAGGACAGGGGGCTGTTTTTGTTGCAGACCAATTTGTGGGGAAAGACGATGTTTTTGGCAGCGATGTGTCGGCCCCGTTGAGCTGAAACGGGCAAGGCAGGTGAGGATGGAGGTGGGCAGCCTCCCTCTGGAGCTGTGGCGTCTGATCCTGGCCTACCTCCCTCTGGCCGACCTGGGCCGCTGCAGCCTGGTGTGCCGGGCTTGGCGCGAGCTGATCCTCAGCCTGGACAACACACGCTGGAGGCAACTCTGCCTTGGCTGTGCAGAGTGCAAGCACCCCAACTGGCCCAACCAACCCCAACTGGAGCCCCGGTCCTGGAGGGAGGCCTTCAAGCAGCAATCCCTGGCCTCCCGGACCTGGAGCCAGAATGGCCAGGAGATGGAGTCCTCCAACTGCCTCTACATCTTTCGCCGCAAGAAGGACAGGAAAGTCATCCACGTGGGCCTGGGCCTCGAGCATGAGAGCCTGCGCAGCGCCCTGGCCTCAGCCGGGGTGTATGACCGGGTGGTGCTGCACCCTGGGGTGTACGAGGAGCAGAGCGAGCTGGTGCTCAGGGTGCCTGTGGAGATCGTGGGCCGAGGGAAGCTGGGTGAGGTGGCCCTGCTGGTCAGCTTTGATCAACAGTGCCCTACCGCCCGCCTCTGCAATCTGGTCTTCATGCCAGCCTGGTTCTCTCCTATCTTGTACAAGACCTCCTCAGGCCATGTGCAGTTTGACAACTGTAACTTAGAGAATGGACAGCTGCAAGTGCAGGGCCCGGGGACGTGCCAAGTGCGGTTCTGCACCTTCAGCCAGTCCAGCGTCCACCTGCACGGTGTGGCGCTCAGCCTGCTGGAGAGCTGTGAGTTCTCGGGCAGCGACAATGCCTCTGTGACTGTGGAGGGATACCCCACTTGCGACCGCAACTGGGCCTGCAAACACTTGACTGCCCTAGCCAGATCCAGGTCCTTAGCCAGTGTGCCAGAGTGGACACCTGAGACCAAACGCCAGCCCGCGGGTTTGATTCTGGATCTGTCCAAAGAGGTGTACCCTTCCAGCTGGGTGGCGGGGCAGGGTGGAGGAGACGGGGAGGGGACTGTGGTACCAGAGACCTCGGACTGCAGCGAGAGCGAGCTCAGCACGGCCAGTGACAACGAGGAGGATGAGCCCGCCGCCTACAAGCTGTCCTACCGACCCCACGGCCTGAGCCACCTCCTGGAACAGTCCCCGGAGGACCCCAGTGCTGTCGTGGGCCCCAGGCTGGAGCTCCGAACACTCCAGCAGGAGCTGCAGAGGGACAAGGAGGCCCAGGCCCTGGCTACATCCATGCAGGGCTGCCTGGTCCGCAACTGTCTGTTCCGGGATGGGAAGGGGGGGGTGTTTGTCTGCGCCCAGGGCCAGGCCAGGCTGGAGGTCAGCGTGTTCCGGAACCTGACCTACGCAGTGCGCTGCATCCAGAACGCCAAGATCATCATGCTAAAGAATGAGGTGTCCCACTGCAAGGCATCAGGAGTGTTCCTTCGTCTGTCGGCGCAGGGCCTCATTGCAGACAACAACATCCATTCGAATGCCGAGGCCGGAGTGGACATCCGAAAGGGGGCCAACCCACTCATCCTGTGTAACCGAATACACAGCGGCCTTCGCTCTGGTATTGTTGTCCTTGGCAACGGAAAGGGTTCCGTTCGCAGCAACCGAATCTATGGCAATAAAGAGGCTGgcatttatatactgtacaatggGAACCCTGTGGTGAGtggaaaCCACATCTACCAGGGTCTGGCTGCCGGCATCGCGGTGAATGAGAACGGCAGGGGCCTGATAGTAGGCAACAAGGGCTGTGGCGTGTGGATCATGTCGTCCAGCCTGCCTCACATCTCCGGGAACCGCATCTCCCACAACAGCATCTACGGGGTGGCAGTGTTCTGCCGCAAGGATGAGGGCGGACACCACCTACCCAGTCAGGGCGGCAACGAGAACTTCAACGAGGAGGGCGAGCTGATCGCCTGGGAGAGTGACCTGGACAGCGAGGACGAGCGTTTCTCCTCCCGTCGGCCCATCAGTGTCGCCCTTATAGAGGCCAACCGCATTGGCCACAACGGAGCTGTGGGGCTCTACATAAAGAGCAGTGAGGCACTCAACATCGTTGGCAATGCGGTCCACGCCAACCGTGGCAGCGGCGTGTCGGTGTTCCAGAGCACCCAGCTCTCCCGCCTAGTCAACAACAGCATCACCAGCAACACCGCCGGAGGAGTCTCCGTGGAGGCTGGCTGTCGGGTGGAGCTGCGCGGCAACGGTGTCTATGATAACAGCAGCCACGGGATCAGCTCCAAGGGAGATGGCGTCATCCTGGAGAATGATGTCATTGGTAACCACGGCTGTGCTCTCAGACTGCTGGAGGCTGCAGACATGAAGTTGCCTGAGCCAGAGTACTGTTTGTTGCAGGTGATGAAGAACCGTGTCCAGTCTCTGCACGGCTGTGGGATCGCGGTGCTGGACCAGGTGAGGGGGATGGTGCAGGACAACCTCATCTTCCAGGGCAAGGCAGGCAAGGCGCTCATCCACAAGACAACTGCGGCCCAGGAGTGTGTGGTGCAGAACAACGAGCTCCTGGCTTTCAGCAGGAAAAAcaCTGACAGGACAGAGGCGACCTGGGTTTTGGAGGACCCACCCCCGCGGCCACACGTGGAGGGCCAGTCCAGCGGAGCCCCCCCGATCCAGCCCACGCCGAGGGGCGTCTCCATGACGACCAGGATCACCGCCCGGGTGGAGAGCGGTTGCCACAACAACGGAAGCATCTTCTGCTCCATCCTGTGAGAGCGACAGGCCGGACCCCGAGGCTCGGCGCCAAACCGAAAGAGCGAGGCAGTCTCTGACTCGCAGGCTCCTCCTGCTGCGGTTTCTCCAGGCATGCCTAAATGTGGGCACACACAGTCCCCTGACAGTACCACTAAGTGCCTGCTTCACAGAGCTCCAGCACAGGGGCACGTCCTCCCATTTCCAAGGGACCTCTTCACCTGGCTCTCCCCCACAATAGGTGAATTGCATGTGAGAGAAATATTGCCAAATGGTGGATTTCACCTGGTTGTCTCCAGTGTGATTGCTATGACTGCTGGCTAATCCTGAGCactttgctgtattttaaatgcttggTCAGTATTATTGGGTTAATTGTCAATCATATATTCCagaaatattttgttcttgttttggtgaagatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaacaccGACTTTTAGTAAAGTTTAAAAGTGTTTACTCTAGGTTTAATTAATACGTTTTTGAAATTCAGCCGTTAGTGACATTGTGTCATACCTTTAAccctaaaatacattttctgagcTATTTGTTGTTAAGGTTTCTTGCTCACTTGACTTCTTCACTTCAAAATGCTACTCTAAGTCTTTAGTCTGTGGTAAAATGAGAGATTATACTTCTGAATTTGGCAAGTTTTAGTTTATTCAGTGTCTGATACCAAGCTCTTAAAACACAGCTGAGTACACAGTCATAGCTCTGCTGGTCTAAGTGGAAGATTAAGTGTGGAAGGTGTCTGCGTTTTTCACCGGTCATGTCAACACAGAGAGCCCGAGAGTAGGATGTAAAATGGTCATGTTTTCTGGAGgtgaaatgttattctgttgAAAAACACTAATTTAATTGACCCGAGAGACAATTAAAATATCATggtaacaaattaattgaaaaacacccagtttaaaaaaaaaagtatttggccTTAGGAACATGTGAGAGATGAGGAAAACAAACccattataaatatatcaatatatatggGGATTTATGCCTCagctgtattaatattattgtaatttgtcaTATACATATTACAGAGTGGCTTAACAAAAATCTGATGCAATACAGCTTAGTTCAATGAAGGATGCACACCGAAGCAAAGTACAAGATCGCAAAAGAATGTAATACACATGAACATGCTACAGTAACCAAAGAATTCAACAAATGATGAAAATGATGGCTTTTGCTGACAGAACTGACTGTCCCTGACCCAGTTACAGTTAGTTTAaacttagaaaacaaaataaaaaaaatctgaaaatattatttctatttttaaaacttttacagTGCTGTTAACCAtgctaaaaatgtgtttatggaCAGTGCTGGCTGCTGTGTGagtaggattttcattcaaGGGAAATAATGTACTCCTCAATCTCAACAGGGTAGTACACTAATCTCTTGTGATATTTCTAGTTAATGTGAGTGaacttatattaaatatatttttctatattaagAGGTAATTCGGGGCATAAAGCAGCAGGTGAGCTTCTCACACAGCAGCTGCAAATTGTGTCAATTCTACACAACACCCCCCAGTCTGTTAGTTGTTTTATCtaagaataaaatgaaatattagaTTGGCAAAGCATGACAAAAACCATTGACTGGGCTAATCATGAAGTCTACGTCTTAGCAGCCATCCGAAGTGTGTCTTTTGGTTTGGAAGCCATGGGGGATTGTTTTACCAATGTAAGAACATGTTTAAAATTTATGTGCTgaataatgttttgaatatgCCCCCTTTGATACATCATTGCAAACACCTTGTGCCGGAGAGGAAAGACAGTGAACAAATATAGTTCTAAATTCTGTGTAGTTGTGAAGGTTTTTTTTCCATGCCCACAGATGCAGGCAAAgttatcttgttttgttttttacaggaGCGTCTAGTAATATTGCCAAGGGAAGATATGAACGGATTCTTTTTGCATGTGTTAGTCACAGTAGAACACAAACCACTAACAAAtagaagataaatatttaaccaTGATTCTCAAAACCTTCTATCCATACCATCACTGTGTCACTTTCCAACTGCTCCTCTGTcaaaagttgtattattatttttatttacaaaaatttAAAAGCCAGTTTTCTACATTCTACACAAAGCTTTTCTGGTGTTTTACTTACTTGGGTGCctttttagaaaacaaagatGTAATGATGTACTTCCCTGAATACGGTATGAACAATTTTATTCTTAATATTCAGGAGAGGGCTGGAAGGCCTCTTTTTGATCTCTCCATTAACCTAAATTCTAAAAGAGATACAAACTCGGTGTCATGGAAATGTCTTTTTCTCTGTGCCTCTCTttcaaaaagaaaggaagaaagagacCATGCAAATAGCTCTCTGGGATTCTCCATGGATACGAAGATTTCTCACAGACTGATATACAGACCGTTGCCATCTCAATACAGTGCTGACAGCGAGAGGCTGAGTTACATAATACACAACGTGCTTTTCAGTTCTCGCAGTATGAGGAAAGTGAAGGGGCTGTGCAGattggtggggggtggggggtgttatATCATTCTCAACTCCAAAACTGTGCAATCAAGAGTCAGAGGGAGAAACCttggaatatgtatttttctgtgcttCGGGGCATCGTGAACTGTATTGAAGAACTGGTTAAATGGACGATTGACTGACATGAGACGCTCCCATTCATTTCTGAAGATCCACTCTTGAGTATCTTGTACTACTCAAAACAGAACTAGCATGGACCAACTCtgctaaaattaaataatgactaCCAAGGCTTATCTGGACATGTGGCTGAGATAGAGACACTTTACTGCCTGGGATCTATTGTCAGACCAATCAGAACACAGGCCACTCCTCTGTGTTGTTAAAGAAGAGTGCCTTTTATGACCGCATATTGAAACTTCTCTGTTCAGTAAACATTCGGGGATTCTTTACACAGTATTTCAACATGCAATGTTCTTCTACAGACACTCAACTATCGGAAAGCTTTAATAATGTAaagtttattgtattcatttatttttactgccttgtatttttttttggttaacaTTTGTGCAATATTTCAcgtctaaaaaaaaataatgaagagaAGGTGCCTAAATTTTAGGGGTTTTGACTATTTTTTCCCTCATAGTGATTTAGACAGAGCAGTCAGtgttttatttccaaataaattTGTTGTGATCACTTTTTATGCAAAAGCTCCATGACTCTCCTAAAAGCAGTACCAGTGCGCTGCAGGTTTCAGATGAAGGAAGTAAAGAGCTTTAATagtaatgaaaaccagaagactcatcaatacattaaattaaactgtaatatatGCATTGTGTTATTCTACAATGGGCTTTCAAATGCAGTCTTTGCTATGGACATTTGAAAAAgttccattttaatttcttactgCATTGAGAGGACTTCAAAAGAATGTCCAGCTTTTTATACTAaattctaagaaataaaaacactttcaacTGCTGACAAAAGTAAAATTGCTTTTAGAAATGCA

Function

GO: NA

KEGG:

id description
K10296 FBXO10; F-box protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116812 lncRNA upstream 820 25050393 ~ 25052374 (+) True AMCG00017843
TU116788 lncRNA upstream 103926 24947991 ~ 24949268 (+) True G93588
TU116610 lncRNA upstream 424776 24626559 ~ 24628418 (+) True G93454
TU116614 lncRNA upstream 424776 24626559 ~ 24628418 (+) False G93454
TU116464 lncRNA upstream 941084 24109095 ~ 24112110 (+) True AMCG00017817
TU116871 lncRNA downstream 235753 25309702 ~ 25312347 (+) True G93651
TU116898 lncRNA downstream 334568 25408517 ~ 25409609 (+) True G93675
TU116911 lncRNA downstream 443352 25517301 ~ 25517637 (+) True G93688
TU116964 lncRNA downstream 875787 25949736 ~ 25950372 (+) True G93733
TU116965 lncRNA downstream 877205 25951154 ~ 25951398 (+) True G93734
AMCG00017843 mRNA upstream 1804 25050309 ~ 25051390 (+) False AMCG00017843
AMCG00017841 mRNA upstream 79424 24972880 ~ 24973770 (+) True AMCG00017841
AMCG00017835 mRNA upstream 147417 24887263 ~ 24905777 (+) True AMCG00017835
AMCG00017830 mRNA upstream 294539 24740960 ~ 24758655 (+) True AMCG00017830
AMCG00017831 mRNA upstream 323030 24726609 ~ 24730164 (+) True AMCG00017831
AMCG00017848 mRNA downstream 8970 25082919 ~ 25093338 (+) True AMCG00017848
AMCG00017847 mRNA downstream 34942 25108891 ~ 25112677 (+) True AMCG00017847
AMCG00017849 mRNA downstream 176245 25250194 ~ 25262749 (+) True AMCG00017849
AMCG00017853 mRNA downstream 200004 25273953 ~ 25299127 (+) True AMCG00017853
AMCG00017854 mRNA downstream 380495 25454444 ~ 25462515 (+) True AMCG00017854
TU116638 other upstream 337573 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 4231247 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 4237648 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 5524901 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 5629515 19421310 ~ 19423679 (+) False AMCG00017710
TU117380 other downstream 3568781 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 4359463 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 7333480 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 7387349 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 7433741 32507690 ~ 32601449 (+) True G94857

Expression Profile