RNA id: AMCG00017845


Basic Information

Item Value
RNA id AMCG00017845
length 6253
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00017845
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24965474 ~ 24986772 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCCTATTTTCCAGGGAGGAGGGATGTTTCACAAGGCGACACAATTCCTGACTAGGGAGCTGGACCCTACGGGGAATCTGGTGCCCGTCAGAAGCATCAGCACTTCGTTTCAGTTCGAGACTCTCTGCCTGGTGAGGAAGGTTGTTCCCTTTTGGCCGTGGAGACCCAACAAGTACCTGCCGACGTCCGTGAAGCTGCAGGACGTGCTGCAGGACACGGACACTGTAGATGTCGGAAGCAGCCCACAGCTAAAGGTGACTCTGAAAACATCATCTCAGGAGCTGGGGAGAATCAGGGGCAAAGTGACGGCCAATTACGTGGAGGTTGACAGCAAGGCCTCACTGGACATGAGCAACATTGTGGGCTCTTTCAGCGTGGAGCTCATAGACATCTCCTTGAACAAGCTAGCAGAGGAGCTGGACAAAATAAAGTTAAACTTGAACCACTGGCTGCTTCAGAAGCTGAGCAAGGCAAGAGCTCATGGGTTGGGAGTGGTCACCCAGTCCATCAAAGCTAGAAGCAAGCTCTTAATAAACAAATCTTTGTCAGGGAGTGGGAGCTTAACGCTGAATATACAGCCTGTAACCAAGGTGGAGGCTGACATGCGGGGCAACACAAATCAAGAGATGGTGGTGGAGGAAGGTACAATCCTGGCCTTCAAGGTGTATGACCTCGGCTTGCACCAGGATGGCACAGTCGAATTCATGGGGATGAAGGATGATATCGATAGGGAAATCAGTGAGCTCTCTAATCTAGACAGGGTGTGTAGTACCAAAATCTGGACCCTGCTCTGCCAGCTGCTGCCACACGAGAACGCCCTGGCTGTGCTGGAGTACATGGTGCCCCCCGATGTGGACTGTCTGGACGAGGGGGTCAATCAGCATTTTACGGACCTGCTGGAGTTTTTGGGGTGGTCCGGGGAAGACGCCGAACAGTTGCCGAATGAACTTAACAGATCCATCGCTTTTCTAGTCAACGCCATGGACAACTTGGATGAGCAGACCGTGCTGGAAATCCCCAGGCTGAACACAGAGGAGCGCAAGCAGCAGATCGAACATGTGGCGGGGATGTTGAAACAGGAGTGCTGTGGTAGGCAGCCGGAAGGGGAGGAGGCTCTGGGGGCAGAAGAGCTCTCTGAGGAGATGTCCAGGAAGGAGGCTGACAAAGGAACCCCCCCCAGGCACCAGAGAGACAGGCTGTTCTCGCTGTACATTGTGCTGCGGGCTGTTGTGGCCATGGGCGTGCAATGACTGAAATAAAGGGGTCTTGTTTTTCTCAAGGATGAGTTCAGCTACTGAAAGACCACACCGAAATCACCCAAAACATCCTCAGAGTGTGAAAAAGGACAAGACAACTGAAGCttcaattatatttctgttccagtagaaaaacaaatgcagaaacaaagcatctgttatttcttaattttttctccCAAAAATTATAACTAAAAACATCACATAATATACAACAATTCGTACggtaattgcattaaaaaaaaaaaactgattatgAACAGTGATACTAATTGATTACAgcttattacaattacaatttagcTTTGTTACACAAGATATGTCCAACTGTGTAAAATTTACAAAGCAtgtacattaaacacatttgcaaataaCACCTGGGAAAGTCTGAAGAACTGTACGTGCAAGTGACGGGAAAGTATAGAAAGAGCTTTAAAGTACATAGAAAACCATATGCAGTAAAATCAAGGACTGGTAAGAATAAAGCATTTCTTGTTCGTCACCATTGCCAAACATGAGTGAAATACCAGCACTATAGGTCAGTAAGAGAGAGTGGCATTAATCTCCTTGACTAGAGCAGTCAATCTGTGAAGAGAGCTCCAGGTTCTCCCAGACTGACCGCTTGGTACTGCCACAGGACTTACGCAGCAAAATCCATAGGTCTGAGGTTCGGTCCAAGATTCATTAGATCTCCATttctatatacaatataatagaGTAGCCTTTCTTCTGTAAGTCACCTCAAGATGACCTCCAGTAAACAGTGGCTGTGCTGTTAGTATTAATGTGGCAGTATTCGACTGCAGTATCACCAGCTATGGGGAAATTCAAGGTCAGCACTGGAAGGTGGccagtttaaatatttgcatttgcaaAATGCACTAAAATCACAGAAGACACTTAAAAGCCTATTTGCACTCAGTGtctgttacatttaaataatctatCATGTTTTAGTGATCATACTGAAAAATGCAAGGCTTCATTTACCAACTGGGTATTGGACTTTCTCATCCACTTCTGACCAACCAAGCCATTGGTTGAAGGTTACTCTCATGCACGTTGCTCTTCGTAAGCATGAGTTCTGCTACTAGAGCAACAAAATTCTTAAAGATTAAACGTGAGGGtccaattaattatttcaactTTATTGTAAAATTGATATATCCAGACTTTCTAAACAAGTGTATTTATACAAAGTGTATTTCATACCAGGCTATTTCATCTGTTGCAGTTGTCTGCTTGagtttattttctatgtaaCAAACAGTCACAGATAACACTTGGAGATAAACTACATCCTGAGAAAAATAGGTATTGGTCAATTGTATCCACTTTGGATGGCCCACCAAAAATGTCTGAATTAAGATGACCAGGGTTGTTTGCCATAATCGGCCCAACCAAATCACAGGACTGACCCATTACCAATTGCTGTCTGGGTTCTAAACTGGAAGTTTAAATAGCTGTAATAGACAATTATATGAACAAATGAATAATCATATGTATACCATACTGGAGTATTATCTCCTTATTGTGTTTCTTTGAGATGCCACCTCAAAGGGCAACATTACAGAGATGGAACATTTAATGCCCAATAACATAAAAGGTCAAATATAATTTCAAGTGAATTAGTGTATTAACAATTAGAAGTATGATCAGTAAGGTGTGTCCTCACGTACAGTTACACACAACTGCTGTATTATAGACCTTTGGTTGGGTCCATAACGTTGCAATGCTGTGAAATAAATGCAGAGAACTAAATCCTGTCAATATCCTGGATCCCTGCATCACATACAGCTTTTCTATTGCATTTGGAAAACCTCAGCATGCTGGAAGGGAGAACGTTTTTCTTGCAGATACTAAGAGGACAAAGTCAAAGGTTATAGTTTCTGTCCAGCCATTCATGTGTACACAGGCACTGAGCTAGCCATAGAGTTGTAAAGTTGCATACATTGGCAGTTTTACAGCTTTGTTATATgcaaaagattaataaaaaaataaaaaaaacacgaCATATAATGGACGTTCAGTTGCAGCACAAGGGTCAGATACTGATGGTTTTATTCCAGGACAATGCGCCCTTTAAGGGGAAAGGCCTTCTCAGTTTTCACTCCCACAAAGTTACTGGGAAAACACTGAAGACTTTTTCCTGAAATAACATGTCCTGGAGTTCTTCGTTATTCCTGCACACTGCGGACTAAGAGAAATTACCCGTTGGTTTGCAGCCAATACGGTAAACCTTGTCGGATTAATTCCTCCTGTGGAGATCACTAGGAGATCTGTGATGGAGCGATATAGGAATAAGGAAAAACTTCACAACTTTTCAATCAAGAGTCAAGAGGTCTTCTCACCCCACTTTCATTAACCTCAGTGGCATAACCCTCTTATTATCTTAACATTTACCAGCTGCCAGTCTCATCACAAACTCACTTGCTGCTAGTTTTTGATTGCCAGGCAGTTCTGGTGCCAATTGCTGGGTGGGTGAAGATTATGACTGCAGCCAGGCCTAAGTCCTTAGGTTCTCAACCTGGGGACCCActcttctgttattttgttattccagTCAAGATCCCGATTAATTGAATCATAAGcagattttttattaatttacagttGAGGATTTCAAGTTATATGGCACATAAAATTACATAAGCAAGTTGCATTTCCCAACATTTTGTAAGctaaacagttttaaaagtcaaattaagcaaattaggTCAATTATATACCAGAACAACTAGCAGGACAGTGGGTCCCCACGAGGAAGGTTGAAAAGCACTGCCTTAGATCTCAGTGGTTTGAATGTGTAAACtctagaaaaacacaaattagaAAGATCTCATCTAGAAtgcagctgaaataaaatatattgtagagtACCTGCATACTCCATGCATCAGTCAGGTATTAAAGTACCCAACCTGCCCTGGGTCTCTCTGCACCCCACAGTGaagtattttacagaaaacaagaatATGATCAACCCTTAGAAGTTTTCCTCATGTACAAGTTgcaatgtggaaaataaaacatgcgtttttgttttattgggttACAGATTATTACAAACACTAATAGATGTATAACTATAGTtagcaatctttttttttttttttttacattttaaatttttcaggtttccatttaaaaaacacaaaaaacccTGAAAAGAACGCAGGTACCTGTGCTGACCTCTAAAATTTAGAGGTGCTTTCAAGGTACTGATCCTTCCCCATGTCTCTGGTTAACCGGTGTAGATCGCTTGCTTCCGGTACAAATCAGGAAACGTAAATGGCCGTCATTctaaaatttgaaaaaaaatacaagacacAAGAGCCTGTAATTGGGAGGTCCAGAACTAGAATCCATGCCTCCTTATCTCCCAACACCACCAGCGCATCCTGACAACCAGTCATTCTGTATTGGAAAGCAGGCATGAGTTTTACAAACCCAATTCCAGCTCCTTAGTCTGCTGGCTGCAATGCAAGAGAAACCCAACATTTTTGCCTGAAAGTCATGGGTTAAGAATGCATCAAACAGGGAACTTACGAGATGTATAGGGGGGGACGATGTTCatgggacacacacagagatttGCAATTTTAAAGTCAGGAAAACAATGActagttttaaattattaggAACAGGGTATCAGGGAAATTTACCTCAGAAACTCAACAATGCTTTCTGACAATGGatagcttttttcctttttaagaaaTAGCTTTACTGATTTATTTCTATAGATGGGTAACACGAACAATTATAGccataaaacaaaagcagtccAGCTGAGGGACTgaataaacaacaacagctcGGGATGAGTTCATTGCTCCCTGAGGCATCAGCGCACCCTTGTAGAGTGAACTACAATGATGCCCAAACCTTCTTCAGCAATGAAGAGTGCTCATTGTCCTGTTTAGTTTCTTCCTTTGACAGAATTGCTCAGAGCACCTTCAGTAGGAACTCGTAGGTGGCGTTGATGATGCCCCAGGAGAGGATGGATCGGTGGTAATTGAGGTGAACTCCTCGGAACAGGTGGGTCACCTTACCTTCCCGCTCGTGCCAGATAGTCAAGAGCACAGCCCTGAATGACTGAAAATCACCCCCCACCTGAGACTGCATGCGTGCCTTCACCACATTGAGGGGGTAGAAGAGGATGCCCAGCATGGCACCCAGCAGGCCCCCGCAGATGAAGTCATTGATCAGGTTGGTGGTGTGGGAGTTGGCCTCGGGGAGCCGCTGGCTGATGGGACCCCGCAGGCCAAAGAAGAGGGCATTACTGGGGCCGTTGCGCAGCAGGATGGGCACCAGGCCGCGGTAGTACTCTCTGAAGCCGTGGTCCCTCAGGAGCGATCGGAAGGCGTGAAAGGTGTTGTTGAAGCGGTCGTGGTGCTTGTGGTCCTGCAAGAGAGTCTGGACCCTCTCGAAAGGGGTGAAAACGGCCTCCGTCGTCCCCGCCAGCACTGCCGCGACACTCCGGGTCAGCAGCTCGGGGGAGCTGGTGTGCCGTTGCAGCAGGCAGGAGAAGTCCTCATAGAGTCCGAACATCAGCGCCATGGTGGAGGTCTTCTGCATGAGTGGGGGCAGGATGCCCCGGTAGAGGTTGCGCAGCCCATCCCTGTGCAGCTGGCGGATAGCATCTCGTGTCCGCACCCCGTACAGCTGCTGCCGGAACAAGGCCTTCTGGATGGGGAAGGTGACGATGATGTTGTTGAATGCCCCACAAGCACCACACAAGTAGTGCTTGCCCTGTGCCATGCCAGCCAGGTGATGGGTGGGGGATGCTGGCAGCACCAGCTCATTCCGCTGCTTTGGCTGGGCTTCTGAATCCATAGCTGCTTTCCCACGGCAAGGTCAGCCCCTGACAATCATCCCCCGTCACCTctcttttttttcctctgtccAGCCAGGCCCGGTCAGTGTCAACTTCAATAGTGagatttctaaaaACGTCTGGACgtctacacaacactacacctCCCGTCTCTCc

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116793 lncRNA downstream 15226 24949968 ~ 24950248 (-) True G93591
TU116791 lncRNA downstream 16338 24947658 ~ 24949136 (-) True AMCG00017839
TU116771 lncRNA downstream 38286 24922467 ~ 24927188 (-) True G93576
TU116683 lncRNA downstream 235252 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA downstream 235252 24728842 ~ 24730222 (-) False G93509
TU116811 lncRNA upstream 20912 25007684 ~ 25009604 (-) False AMCG00017844
TU116851 lncRNA upstream 120030 25106802 ~ 25107082 (-) True G93639
TU116853 lncRNA upstream 124118 25110890 ~ 25111090 (-) True G93641
TU116881 lncRNA upstream 386161 25372933 ~ 25381038 (-) True G93660
TU116912 lncRNA upstream 530514 25517286 ~ 25517600 (-) True G93689
AMCG00017839 mRNA downstream 16432 24946095 ~ 24949042 (-) False AMCG00017839
AMCG00017837 mRNA downstream 22841 24928171 ~ 24942633 (-) True AMCG00017837
AMCG00017836 mRNA downstream 46648 24903782 ~ 24918826 (-) True AMCG00017836
AMCG00017840 mRNA downstream 126327 24799083 ~ 24839147 (-) True AMCG00017840
AMCG00017838 mRNA downstream 177133 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017844 mRNA upstream 10772 24997544 ~ 25018212 (-) True AMCG00017844
AMCG00017846 mRNA upstream 88833 25075605 ~ 25080431 (-) True AMCG00017846
AMCG00017851 mRNA upstream 108426 25095198 ~ 25100631 (-) True AMCG00017851
AMCG00017850 mRNA upstream 114061 25100833 ~ 25105142 (-) True AMCG00017850
AMCG00017852 mRNA upstream 129166 25115938 ~ 25224281 (-) True AMCG00017852
TU116215 other downstream 1643520 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1643520 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1643520 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5546118 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1025889 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1025889 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1117254 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1122288 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3116527 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile