RNA id: AMCG00017846



Basic Information


Item Value
RNA id AMCG00017846
length 1260
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00017846
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25075605 ~ 25080431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCAGCCTCCAGTGTCTGGAAGTACTGTGAAGAAGAGCAAGCGGGAAAGAGCGCGTTAATAGTCCAGTTTTCCAAtggacaaattaaaaacacagaacaagtGGACTTCACTTTCTATAAAAACGCGGACACCAGCAATCCAAGAAAGAAGAACCGGCGTATTGTGGCTGCGGACACGGACCGGCTCTGCTACGTGGGCAACAATTATGGAGCAGGAtccttaaaatgtaacaatctTTGCAAGTATTATGTAGGCGTTCTGGACAAGAAGACAAACCGAATGGAGGTGCACAACGCTGAGCTGTTTAGCATGCAGCCAGTCCTCCCAGGTGAAACTTTAAAGGAAGAAGGTGCCTCAGAAATCCAGGATAAATCCTACAGGGAAAAGGTGGATTCTCTGATCGAGGCTTTTGGCACCAATAAGCAGAAGCGTGCCCTGAGCTCCCGGCGGCTGAACCAGGTGGGCAGCGAGACTCTGCACAAGGCTGTGGCCAAAGCGGCTGACAACATAATCGAAAAGAAGGGCCTGAAAGCCCTTGTACAGGATGTGgtgcagacagagacacaggctgAAAATGACCTCTACCTCCCACCTTGTAATCCGGGGGCAGAAACACCTGCCGATGTCTACGCATTTGACTCCCGTATCCTTTCTATTATTTCCCCGGCGCAGTACAAGGCCCTGGAGACGCCCGCCCAGACTCTGAAGGGACTCTCTGAGGAGGACATTCAGAAGATGACTCAGGAGGGGAGTTCCCTGGTTGTGCTCAAGGAGTTGCAGTGTCTGCCTAAGGACCCAGAGGCTCAGGACCACAAAGTCCGCTGCCTCTGGTATCTCAACTGGCTCTTCAAGCTGTCCTCCCAGAGAAGGATCGGCCCAAAGTatGGTTCGGAGGAGGGCATGCCACGGAACATTATGACTTCCTTCCTCAAGAACTTCACTGTTGAAACGTTCAATGATGGCCAGATTCGAAATATGGTTCCAGCTTCCATGAAGACTAAGATTGTTGCCTACGCCCTGGCCCTCCTGCTTCACATCAGAGACTTTGAGGTGGACCTGACTCTACTGCAACGAGACTTCAGACTCACCGAGAACAAGATGCTTGAAGTTGCTAAAGCCATGGGACTGAAGATCGGCAAAATATCTGTACTGGCTTCTGGGGGGCTGATGGAGGACCACAAATTGGGCACACTGGTTCTCCCGCTGATGAAGTATGACCAAAGGATGGAGAGGAGGAAACGCAAGAAGATGTCATAG

Function


GO: NA

KEGG:

id description
K03005 RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU116811 lncRNA downstream 66001 25007684 ~ 25009604 (-) False AMCG00017844
TU116793 lncRNA downstream 125357 24949968 ~ 24950248 (-) True G93591
TU116791 lncRNA downstream 126469 24947658 ~ 24949136 (-) True AMCG00017839
TU116771 lncRNA downstream 148417 24922467 ~ 24927188 (-) True G93576
TU116683 lncRNA downstream 345383 24725938 ~ 24730222 (-) True G93509
TU116851 lncRNA upstream 26371 25106802 ~ 25107082 (-) True G93639
TU116853 lncRNA upstream 30459 25110890 ~ 25111090 (-) True G93641
TU116881 lncRNA upstream 292502 25372933 ~ 25381038 (-) True G93660
TU116912 lncRNA upstream 436855 25517286 ~ 25517600 (-) True G93689
TU116944 lncRNA upstream 729113 25809544 ~ 25809853 (-) True G93718
AMCG00017844 mRNA downstream 57393 24997544 ~ 25018212 (-) True AMCG00017844
AMCG00017845 mRNA downstream 88833 24965474 ~ 24986772 (-) True AMCG00017845
AMCG00017839 mRNA downstream 126563 24946095 ~ 24949042 (-) False AMCG00017839
AMCG00017837 mRNA downstream 132972 24928171 ~ 24942633 (-) True AMCG00017837
AMCG00017836 mRNA downstream 156779 24903782 ~ 24918826 (-) True AMCG00017836
AMCG00017851 mRNA upstream 14767 25095198 ~ 25100631 (-) True AMCG00017851
AMCG00017850 mRNA upstream 20402 25100833 ~ 25105142 (-) True AMCG00017850
AMCG00017852 mRNA upstream 35507 25115938 ~ 25224281 (-) True AMCG00017852
AMCG00017855 mRNA upstream 266389 25346820 ~ 25366550 (-) True AMCG00017855
AMCG00017862 mRNA upstream 742545 25822976 ~ 25923225 (-) True AMCG00017862
TU116215 other downstream 1753651 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1753651 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1753651 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5656249 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 932230 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 932230 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1023595 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1028629 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3022868 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile


AMCG00017846 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

AMCG00017846 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00017846 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.