RNA id: AMCG00017854


Basic Information

Item Value
RNA id AMCG00017854
length 1416
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00017854
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25454444 ~ 25462515 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGCCTTGTGTGTTGAATGCTGTTCTTGGTTCGGCCTCTTCCCACAGAGTGAAGACAGCCCGAGCCCGAAGCGCCAGCGGCTCTCGCACTCGGTCTTCGATTTCGCCTCGCCTGCGCCCTCTCCGCCAATGCGGCCATGGGAGATGCCAACCAATCGGAGGCCCCCTTCGGCTCGACCCAGCCAGCACCACTTCTCAGGGGAAAGATGCCACACTCCCGCACGCAACAGGAGGAGCCCTCCTGTCAGGCGCCAGCGTGGGCGCAGGGACCGGCTGCCGAGGCACAGCACTGTGGGGCAGGATGAGAACTACCACCACCTCACCTACGGCCAGCCCCCCAGCCTGGAGGAGCCGCGGGCCTTCCACCCCCCCAACGTGTCCCCACGCATGCTGCACCCCGCCGCACACCCCCCCCAGCAGAGCGCAGTCATGGTGGATATTCACGAGCAGATTCACCAGGGCACTGTGCCAGTGTCTTACACAGTCACCACCGTGGCGCCACATGGGATCCCCCTGTGCACAGGCCAGCACATCCCCGCCTGCAACACCCAGCAGGTCCCTGGCTGCTCTGTGGTCTTCAGTGGTCAGCACTAccctgtgtgcagtgtgcccCCTCCGATGCTGCAGGCGTGCTCTGTGCAGCACTTGCCGGTCCCCTATGCATTCCCATCCCTGATCTCCAGCGACCCCTTCTTAATACACCCCCCACACCTCTCCCACCAccctccccacctccctcccCCCGGCCAGTTTGTCCCTTTCCAGACACAGCAGTCCCGTTCGCCGTTGCAGAGAATAGAGAATGAGGTGGAGCTTCTAGGAGACCATCTGTCTGTGGGGGGTGGTTTCAGCTACCCTCATTCAGCACATCCCACCACACtgcccccctccacccctctccAGTTCCTCTCTCACGACCCCCTGCATCAGGAGCTGTTTGGAGTACCTTATCCACATTTCATGCCTCGACGAATCACAGGTCGCAGATACCGTTCCCAGCAGCCATTGCCCCCTCCACCCTATCACCCTAGCTTCCTGCCATACTTCCTCTCAATGCTTCCAGTACAGCCAACAGTGGGACCAGCCATTAGTCTAGAGCTTGATGTGGATGATGGAGAAGTTGAAAATTATGAGGCTCTGCTAAACCTGGCAGAGCGTCTTGGAGAAGCCAAACCCAGGGGCTTAACAAAGGCTGATATCGAACAGCTTCCATCTTACAGATTCAACCCAAACAACCACCAATCAGAACAGACCTTGTGTGTAGTCTGTATGTGTGATTTTGAGTCCAGACAGCTACTTCGGGTCTTGCCTTGCAACCACGAATTCCATGCCAAGTGTGTTGACAAATGGCTGAAGGTAAGTTGCAGCACAGCAAGTTTTGCTAAGCAGTGTCAACAGACATACTGTACCTAA

Function

GO: NA

KEGG:

id description
K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116898 lncRNA upstream 44835 25408517 ~ 25409609 (+) True G93675
TU116871 lncRNA upstream 142097 25309702 ~ 25312347 (+) True G93651
TU116812 lncRNA upstream 402070 25050393 ~ 25052374 (+) True AMCG00017843
TU116788 lncRNA upstream 505176 24947991 ~ 24949268 (+) True G93588
TU116610 lncRNA upstream 826026 24626559 ~ 24628418 (+) True G93454
TU116911 lncRNA downstream 54786 25517301 ~ 25517637 (+) True G93688
TU116964 lncRNA downstream 487221 25949736 ~ 25950372 (+) True G93733
TU116965 lncRNA downstream 488639 25951154 ~ 25951398 (+) True G93734
TU116966 lncRNA downstream 489553 25952068 ~ 25952377 (+) True G93735
TU116967 lncRNA downstream 490989 25953504 ~ 25953740 (+) True G93736
AMCG00017853 mRNA upstream 155317 25273953 ~ 25299127 (+) True AMCG00017853
AMCG00017849 mRNA upstream 191695 25250194 ~ 25262749 (+) True AMCG00017849
AMCG00017847 mRNA upstream 341767 25108891 ~ 25112677 (+) True AMCG00017847
AMCG00017848 mRNA upstream 361106 25082919 ~ 25093338 (+) True AMCG00017848
AMCG00017842 mRNA upstream 380495 25053194 ~ 25073949 (+) True AMCG00017842
AMCG00017857 mRNA downstream 95370 25557885 ~ 25574707 (+) True AMCG00017857
AMCG00017856 mRNA downstream 151367 25613882 ~ 25625670 (+) True AMCG00017856
AMCG00017858 mRNA downstream 179300 25641815 ~ 25665195 (+) True AMCG00017858
AMCG00017859 mRNA downstream 296993 25759508 ~ 25777438 (+) True AMCG00017859
AMCG00017860 mRNA downstream 462146 25924661 ~ 25945888 (+) True AMCG00017860
TU116638 other upstream 738823 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 4632497 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 4638898 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 5926151 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 6030765 19421310 ~ 19423679 (+) False AMCG00017710
TU117380 other downstream 3180215 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 3970897 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 6944914 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 6998783 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 7045175 32507690 ~ 32601449 (+) True G94857

Expression Profile