RNA id: AMCG00017861


Basic Information

Item Value
RNA id AMCG00017861
length 4785
RNA type mRNA
GC content 0.41
exon number 13
gene id AMCG00017861
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25945141 ~ 25957648 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCACCGGAATGTGAAGAGGCTCTCATGGACAAATGTGGAATTTGCTTTGGAGACAACTCGGCCTGTGAAGTTGTCACTGGGACTTTCACGCGCTCCATTCTCTCAGTTGGATACCACAAAATTCTCGAAATTCCCAAAGGAGCgacagaaatcaaaataaaagagatGGTGAAGAGTACAAATTATCTGGCAATAAGAGACCAGCATGGCGAGGCCGTCATCAATGGGAACTGGGCCATCGACAGACCAGGGCAGTTTCTAGCAGCAGGGACAACATTCACCTACAAGAGACCCAATGAGATCCGCAGCAAAGCCGGAGAGTCCATTACAGCACAGGGACCCACGAATGAAGTGTTGCATATTTATGTCATATATCAACAGGCGAACCCCAGTGTGTATTATGAGTACATTTTACCCAGAGATAATATTTTCAGCATACAACCAGTACCTCATTCTGACATCCAACCACTGGGTGAGACACAAAGCAGTCAACTCGGACCCTACACTGTGAACGGACAGAGCTATTCTCTGAGTGATGCCAATGGAGACAACTTTGTAAATGGAGTCCACACCAATCAGGTCTCTGTAGAACAATTCACTCCCACCACCCTGCAGCCGTATGATTCTGCACTTTGGGACGACAGGAATGAGTCCCAGACGGCGTACAACTGGAAGTACGCTGGAATGACTCCATGCAGTGCCTCCTGTGGGGGAGGCACCCAGTTCCCTTTGTTCATCTGTGTGGAGAGATCGACTCACGAGCCTGTGTCCGAAAGCCTCTGTGATGAACATTCAAGGCCAACGCCTGAAGAGGAAGCTTGCAACACTCAGCCCTGCCCTGCCTTCTGGGACATTGGCGAATGGTCTGAATGCAGTAAAACTTGTGGTCCAGGGATCCAGCATCGGCAGGTGCTGTGCAGACAAGCTACCGTCAACCAAACGACCACCGTCCCGCCACATCACTGTCGCTACCTGGAGAAGCCAGCGACCACCACCACCTGCCAGCTGAAGATCTGCAGTGAGTGGCAAATCCGCACTGAGTGGACTTCGTGCTCTGTGCCCTGTGGGGTAGGACAGAGGACCAGGGACATCAAATGCGTTGACAATCTTGGAGACGTGGTGGAGGATGAAGAATGCAACATGAAGCTGAAACCAGGGGACTCCGAAAACTGTGACATGGGGGCGTGCAGCAAGAGCTGGTTCATCACAGAATGGAGTGACAGGTGCTCAGCCGAATGTGGAAGTGGCAGCCAGACCAGGGATGTGGTTTGTCTCATGAACCACATCAGCAGCCTGCCACTGGAAGGCTGTGGCAACGAGAAGCCAACAGAGACGAAAGCCTGTGACTTCGGCCCCTGCCACGAGAAAGTGGATTGGTATACTGGGCCCTGGGGACAGTGCTCTGCAGAGTGTGGCAATGGCACTAAGACCCGGAGTGTGGTGTGCCTCAGACAGTCCAACAGCAGCTTCATGGAAGCAGACCTCTGGGAATGTGGTCACCTCCAGCCACCTCCCGCGGCACAGGACTGCTTCCTGAAGAAGTGTGGGGCCAAGTGGTTTACTACTGAGTGGAGTGTGTGCTCCAAATCGTGCGAGGGGGGATACAGGGTCAGAGAAGTCCGCTGCCTAGCAGACGATAAGACGCAAAGCAGCAATTGTGACCCGTTCCTTATGCCAGAAGACCGAGAGGAATGCAACATCCATCAGTGCATTCCTGAGATTGATGCGAACTGTAAGGACATGTACTTCAACTGCAATGTCGTGGTGCAAGCAAGGCTCTGCGTTTACTCCTATTACAGAACCGCCTGCTGTGCCTCCTGCTCCAAAGTCAGTAGGAGGGAAGCTCACCTGAGAAGGAGATGACTTCAGTTGAACAAGCCTCCTCATTGCTTGCAACTTACAGACATCCATACTGGTTGAATGTCGAAAACCATTAAGGCACTGTATGTGCTTTGAGCCTCTTTACaacaagtaataaaaaaaaaacaagttggaGGTCCAGCGATTGATTTTTGCACAATTAAGGGGAATATATGGTACATATTATATTAAGTTCATTTATTGTTGAAAACCTTGAACTGTCCTGTATTTTCCTGCATTGAGAAACACATTCAGTATGCCCACTGGACCTTACATAACAGAAACACCAGTTTCAGGAGAGGTACCATTATAGGGAACATGCTGGGTAAACAGGACAACAGTATTGATTGATGATAAATAAATGGTGTTCATTATTCCAAACTAGGGGTTCAGTATACCCAATGGCAACCTCCTTACTTACATACTACCAGCTACTAAATTATCATAACTCATAAAGCACAGAGAAGTTACATTAGATGGGCGATTtaatgcatcttaaaataacacattgcaTTCTTGTGATATCTGAAAGGTTTTACAGGATAAACCATGATCTAGTACTGAATTTTAGTAtcttgcagtttttgtttttatttgcgtTTTAAACTATagtgaatgaaacaaaacaaaaccaatgtaTTTTCCCATTTCTATTTTGCTTCATTCATGATCATTGCATTGCAGGGCTGTGTATGACTTGTGTAGTGAGGCTGTTCGGTGTTGTGTGCAGAGGGAGATCTGACTGGAGTGACAGCACCACTAATTGGATTTTGGGAACTCAGCATTCAAATCTAGACAGCAGAGTTGTGAAGGGGTGGGAAGGCATGCCTCTTAGCACCAGCTAGGGCTACTCAAACATGCAACCCTTCAAAACCACTGCAATTTGCTCAACATTCTCAGTAGCAATACTGATCCCaccaatataatttataatggcTTTAGGAAAAGCTGTATAATAGTTCCTAGTTACCCATCCAGATTTCATTTAGGTGCCAAATTAGCAGATGATTCTAAAGGACAAACTGCGAACTCTGCAACAACATCAGAAGCTCTACAAAAAGATGCAGTTACTTTTCAAAtctaaatagaaaacaaatgcagtacaAATGTGTAGTAAAAGGGAAACGTCTACATGTTGTAGCAAGAATGTATAGAACGCACCGATCTGGAGAAATTACTCAAAAGATGGATGATGTGTTTGTGATACAGTCctcataaataaagtaaaagtatAGTTAAACCAATGGAGGTTCTGGTACAACCTAACACACAAGAGTTCATTTTTGAATAACCCCTGGAAGTCCTGAAATATATTTCTGGCCTAAAGGAGCTCTGGCTCTTCTTCTGGTCCTGGAATGTCCATTTGGCTGTTGGCTTGATTAGGCCACTTGGATCCATATAGTTTGTCAACCACTGATGCCCCTTGTGCTCCAACTGGGATTGGGATGCAGGAAAATGCTTAACAGTGGTCCTTATTATCCATTTCCTCTTCCTTCTCTTGGACTTTTTGGAGTTGTCAGTATCAAATGGTTCAAACTGATATGGCTGTATAATGCATGCCTCCACCTTGGATAATTACAACCATTTGAAGTGTAACAGCCATCCTGTTATGTCAATTTACCATAATATCAATTAGTACACATTCAGCAAAGGCGTgacaaacagaaatatgttCACAGTAAAGCAGCGATATATTGCATTTCCCTTctgttgtgtctttttttttttttttctccttcaggaAACTATAAAATCCTTACATtccattattttgctttgtgaagtcaataaaaaaatcctttaGCAATTCAGCATTTCTGGCGTCTACAGAGTCAAAGGgttaatgctttgaaatgtcaatattataagtattaatccacataaaacaaattgtgacaaataaaaaatccttttatgaaagctgtgtttacattttggtgTAAGATCATTTCAGAAGCCAAGAATAATCGCAGCAGAATGTGTGGCCTTGGCAGATGACCTTGGTAAACTGTTTGgcaatcatatatatatataaacaaacatttactttctgcatgcatgtatgtatatccATAGGCTTTTGTTcataaaatgcacaaaagacATGACACCCACACATTAATTTTCCAGAATATGTTTCTTTACTGATATAAATCAGACTTTTTAAGTGTTTAACTCTTTTTGAACTCACAGACTGAATGTAGAATAGAGCCCAAGATATCCCACTGTCCAGCTGAAATACAGTTTTCTGATTGTTCAGGTATATTATCACATTCAGAGAAACGCTACTCTATTATCTTACAACTAAAAATCACTGATTatgctatttttttgttttaatacattgccAAGGACATCATCCAAGTAACTTCAATGTAACTCCAAAATATAACTTtgtttatcaaattaaaatacagatttgtttttaagcatcGTACCaacaatcatttattaatactGTCAAAGTTTACAAAGccacataaataaaccaaaaatacaAGGTGAACCAATAGAAATGAATTTTGACACGAGCAACAATAAATTTACCCCTGAGATTACAAAAATATTCAATCCTGGTATGCAAGTTTACATCAGTTACTAgtatatactgatatatatatatatatacatatatacatatatatatatatatacatatatatatatatatatatatatatatatatatatatatatacatatacaaTAAATATACAAGGCTGCTGTCAATCGTCAAGAGAACATCCAAGCATTCGAGGCAATACCTTTGGTTTAGGGTtagtataattttatatatatatatatatatatatatatatataaaattataactAACTAATATAGAgttagtataattatatatttatatgtattaacaATCATTGAGTACACTGAAAAGAGTACGAAGAAACAGCTAAAATAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116944 lncRNA downstream 135907 25809544 ~ 25809853 (-) True G93718
TU116912 lncRNA downstream 428160 25517286 ~ 25517600 (-) True G93689
TU116881 lncRNA downstream 564722 25372933 ~ 25381038 (-) True G93660
TU116853 lncRNA downstream 834670 25110890 ~ 25111090 (-) True G93641
TU116851 lncRNA downstream 838678 25106802 ~ 25107082 (-) True G93639
TU117044 lncRNA upstream 300448 26258096 ~ 26258367 (-) True G93802
TU117058 lncRNA upstream 395869 26353517 ~ 26353724 (-) True G93816
TU117088 lncRNA upstream 541266 26498914 ~ 26499177 (-) True G93843
TU117271 lncRNA upstream 1805038 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 1821389 27779037 ~ 27784050 (-) True G94012
AMCG00017862 mRNA downstream 22535 25822976 ~ 25923225 (-) True AMCG00017862
AMCG00017855 mRNA downstream 579210 25346820 ~ 25366550 (-) True AMCG00017855
AMCG00017852 mRNA downstream 721479 25115938 ~ 25224281 (-) True AMCG00017852
AMCG00017850 mRNA downstream 840618 25100833 ~ 25105142 (-) True AMCG00017850
AMCG00017851 mRNA downstream 845129 25095198 ~ 25100631 (-) True AMCG00017851
AMCG00017866 mRNA upstream 54840 26012488 ~ 26015942 (-) True AMCG00017866
AMCG00017867 mRNA upstream 75467 26033115 ~ 26049947 (-) True AMCG00017867
AMCG00017869 mRNA upstream 119080 26076728 ~ 26082767 (-) True AMCG00017869
AMCG00017870 mRNA upstream 138792 26096440 ~ 26097928 (-) True AMCG00017870
AMCG00017872 mRNA upstream 154465 26112113 ~ 26193833 (-) True AMCG00017872
TU116215 other downstream 2623806 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 2623806 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 2623806 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 6526404 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 55013 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 55013 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 146378 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 151412 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 2145651 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile