RNA id: TU116972


Basic Information

Item Value
RNA id TU116972
length 1746
lncRNA type sense_over
GC content 0.36
exon number 2
gene id AMCG00017861
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25945141 ~ 25957648 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATTTTCCAGAATATGTTTCTTTACTGATATAAATCAGACTTTTTAAGTGTTTAACTCTTTTTGAACTCACAGACTGAATGTAGAATAGAGCCCAAGATATCCCACTGTCCAGCTGAAATACAGTTTTCTGATTGTTCAGGTATATTATCACATTCAGAGAAACGCTACTCTATTATCTTACAACTAAAAATCACTGATTatgctatttttttgttttaatacattgccAAGGACATCATCCAAGTAACTTCAATGTAACTCCAAAATATAACTTtgtttatcaaattaaaatacagatttgtttttaagcatcGTACCaacaatcatttattaatactGTCAAAGTTTACAAAGccacataaataaaccaaaaatacagtatataaaatacaaagggaaaaaaaaaaaactctcataAATGACAATTAACAGAGGTGAACCAATAGAAATGAATTTTGACACGAGCAACAATAAATTTACCCCTGAGATTACAAAAATATTCAATCCTGGTATGCAAGTTTACATCAGTTACTAgtatatactgatatatatatatatatatacatatacattgtgCTACAGATAGAAGGCACATGAGAGTCAGGCAGTGTTAACCTCGAGGCAAAACACTGCACCCTTGTAGTGTCAGCTGGaagttgaaagaaaaaaagcagacaaacaaaacaggaaaataacaaaggtcctaaaataagttttaatggcagtgtaaaagacACCAGAAGAGTTAAGGCCAATTACCAAGAAACCCATATAATTCAGTAAGTTCTGAACAACCACACAGGTTTACAGGTTTTCCCCATATGCTAGTCCACGGTGTACAATGTGAAGCCTATTATATTCAAATGAGGCTTGTCGAAGATTTTAtgcacaatataaatgtattgtagaTAAATATACAAGGCTGCTGTCAATCGTCAAGAGAACATCCAAGCATTCGAGGCAATACCTTTGGTTTAGGGTtagtataattttatatatatatatatatatatatatatatataaaattataactAACTAATATAGAgttagtataattatatatttatatgtattaacaATCATTGAGTACACTGAAAAGAGTACGAAGAAACAGCTAAAATAatggatggacagacagacctacactgacacacatataATGTACAAAGGCCATAATTTAATAACTTCAAATTTGACAAAGCTTTTTCTCttattctttaaatatgttcaagttttttttttttttttttttttttccctttctcttctctttccccCCCATGTACACATCTCAAGCACAAGAACAAGTACAAAACGAAACTCAGGAggggaagaaaattaaattaatgtcgATTTCAAGTTTGTCATTCCACGTGTGCAAGTCAACAATGCTACACTCGTAAGACGCGCCTCGTCAGTGCTGCTCTTGAAAGCTTAACAAGCTGCAGGACCCAGCTCTCTCTCTACATACCGTAACGTGTCAGAGACTTGGATCTCTCCAGTGGGCATCGCGGCAGGACAGGCCTCACTCGCTGTCGGTCTCCACGTCCGAGTCCGACCACTCGACCGGGGTCAGCATGCCTCTGCGCTGCGCGTACTCAATGACCGCCATGTAACAGAAATAATACTGGTCCCAGGTCTGGATACTGAAAGCACGTTGAGTCCGCATTCTCCTCACTGTCTGGTTCACATCCACCGTGCCAATGTCCTCTAATCTGGAGAGGCAAATATCCAGAGTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116944 lncRNA downstream 135288 25809544 ~ 25809853 (-) True G93718
TU116912 lncRNA downstream 427541 25517286 ~ 25517600 (-) True G93689
TU116881 lncRNA downstream 564103 25372933 ~ 25381038 (-) True G93660
TU116853 lncRNA downstream 834051 25110890 ~ 25111090 (-) True G93641
TU116851 lncRNA downstream 838059 25106802 ~ 25107082 (-) True G93639
TU116973 lncRNA upstream 281 25947235 ~ 25948594 (-) False AMCG00017861
TU117044 lncRNA upstream 311142 26258096 ~ 26258367 (-) True G93802
TU117058 lncRNA upstream 406563 26353517 ~ 26353724 (-) True G93816
TU117088 lncRNA upstream 551960 26498914 ~ 26499177 (-) True G93843
TU117271 lncRNA upstream 1815732 27762686 ~ 27767331 (-) True G94008
AMCG00017862 mRNA downstream 21916 25822976 ~ 25923225 (-) True AMCG00017862
AMCG00017855 mRNA downstream 578591 25346820 ~ 25366550 (-) True AMCG00017855
AMCG00017852 mRNA downstream 720860 25115938 ~ 25224281 (-) True AMCG00017852
AMCG00017850 mRNA downstream 839999 25100833 ~ 25105142 (-) True AMCG00017850
AMCG00017851 mRNA downstream 844510 25095198 ~ 25100631 (-) True AMCG00017851
AMCG00017866 mRNA upstream 65534 26012488 ~ 26015942 (-) True AMCG00017866
AMCG00017867 mRNA upstream 86161 26033115 ~ 26049947 (-) True AMCG00017867
AMCG00017869 mRNA upstream 129774 26076728 ~ 26082767 (-) True AMCG00017869
AMCG00017870 mRNA upstream 149486 26096440 ~ 26097928 (-) True AMCG00017870
AMCG00017872 mRNA upstream 165159 26112113 ~ 26193833 (-) True AMCG00017872
TU116215 other downstream 2623187 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 2623187 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 2623187 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 6525785 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 65707 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 65707 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 157072 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 162106 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 2156345 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile