RNA id: TU116982


Basic Information

Item Value
RNA id TU116982
length 1298
RNA type TUCP
GC content 0.39
exon number 3
gene id AMCG00017866
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26012488 ~ 26015942 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCTTGCATCCTCTCAATGCAGTTTTTGTTTACATCGAGGGGTTGTGCATTTGGGAAGGGTTTGTGTCAGTACATCGCATCATCACATCGCCATGGCAGGGTATGGAGTGATGGCCGATGAAGGAACCATAGATTACTCCGTGCATGAAGCGTGGAATGAGGCCACCAACGTGTACCTGCTGGTCATTCTGGTCAGCTTTGGGCTCCTCATGTACGCCAGAAAAAACAAAAGGAAGATCATGAGGATTTTCGCACTTCCTCCAACAGTGGGATCTACACCAGAGCCTAACTTCTATGATGGCTTACAGAAAGTGCGCTTACGGCAACAGCTAGAGATGTACTCCCTTGGTAAGGAAGCAAGAAAATATgaccaacagcagcagcaagttCAACCCGATAGTGTACAACTTTCCATGGAGTGAATACCAgaagagacttttttttttgtactattaCAAATGTGAACTGTGGCATTCATTAATATGTgcaataaatcattttatttagcGTTTTGTTGAACTGAGGACTCAGGACTGTTTtagtaaaaatattatttaaacttgAAAATGTTTGATAATGTTATGCATTTCTTGTAATATATGTACAGTCAAGCTTAAAGGGTTACCTCATCATCAGGAAGCTGAAAAATGAAgatcaacattaaaataaaatgtgaatcaaAAATGGGCAATACTTGTCATACTTAAGAAGGCCCTCCTCAGTAAGGGATATCATCTGATTGCCTTTAACTACAGCACAGCCATCCTACAgccagtttacatttttgttgcatcctgctgttaaatacattattcaagtttttgttgacctgttttaatacatttttgtggatATTGCCTGcataaaaaacagcaaacagcCACCTGGAGTGCAGTCCATTTCCCTTTAGCTGATTCCTGATAGTTTGCATCAAAATAGAACTAACAGTGGACCTCTTTGCACATCTACAGACCTTAAACAGCACTCCTCAAGTTTCTGGAGGGCACCTCTGGTTGGTGCCAAGATCAAACCTCAAAGGTCTTGATAAATGGATGAAACGTTTGGAAAGATCTGGTTGGAAAGATTCCTTCTGTTCTCCGTGCTCGCTGTGAGTTGGTAGAATGATGTTATTTTtgtctataataataataataataataataaaaaaaaactcatccTTTGAACCTTAAGCTTTGAATCATGAAGTGTTACTTAATACGTGTAATCTGGAATTATGCAACAATGTAGGGCATGCACAACCGCACGGGCCAagttgaatttaaatttaaattttacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116973 lncRNA downstream 64067 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 65707 25945141 ~ 25946954 (-) False AMCG00017861
TU116944 lncRNA downstream 202808 25809544 ~ 25809853 (-) True G93718
TU116912 lncRNA downstream 495061 25517286 ~ 25517600 (-) True G93689
TU116881 lncRNA downstream 631623 25372933 ~ 25381038 (-) True G93660
TU117044 lncRNA upstream 242604 26258096 ~ 26258367 (-) True G93802
TU117058 lncRNA upstream 338025 26353517 ~ 26353724 (-) True G93816
TU117088 lncRNA upstream 483422 26498914 ~ 26499177 (-) True G93843
TU117271 lncRNA upstream 1747194 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 1763545 27779037 ~ 27784050 (-) True G94012
AMCG00017861 mRNA downstream 55013 25945760 ~ 25957648 (-) True AMCG00017861
AMCG00017862 mRNA downstream 89436 25822976 ~ 25923225 (-) True AMCG00017862
AMCG00017855 mRNA downstream 646111 25346820 ~ 25366550 (-) True AMCG00017855
AMCG00017852 mRNA downstream 788380 25115938 ~ 25224281 (-) True AMCG00017852
AMCG00017850 mRNA downstream 907519 25100833 ~ 25105142 (-) True AMCG00017850
AMCG00017867 mRNA upstream 17623 26033115 ~ 26049947 (-) True AMCG00017867
AMCG00017869 mRNA upstream 61236 26076728 ~ 26082767 (-) True AMCG00017869
AMCG00017870 mRNA upstream 80948 26096440 ~ 26097928 (-) True AMCG00017870
AMCG00017872 mRNA upstream 96621 26112113 ~ 26193833 (-) True AMCG00017872
AMCG00017876 mRNA upstream 268473 26283965 ~ 26407993 (-) True AMCG00017876
TU116215 other downstream 2690707 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 2690707 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 2690707 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 6593305 19412987 ~ 19419356 (-) False G92591
TU117033 other upstream 88534 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 93568 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 2087807 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 2858669 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 3253743 29269235 ~ 29273168 (-) True G94238

Expression Profile