RNA id: AMCG00017873


Basic Information

Item Value
RNA id AMCG00017873
length 2112
RNA type mRNA
GC content 0.41
exon number 7
gene id AMCG00017873
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26453244 ~ 26457630 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATTTTAAGACCTCCTTCCTCAGCCAATGAGGTTGAAGTATCAGTTCACGTGAGGGAGCGCGCATGTGATCTGAGTCACATGACCAGGGTTCACTGAGGCCGCAGaggaggcagcagcagcagcaacaacagcgaGACttATTTAAGCCTACTGTCAGAAGGAACGCAATGAGACTAGTAATCCTGGAGGACTATGATTTGGCCAGTGAATGGGCTGCCAAATACATTCGCAACTGCATTATCCAGTTTAGACCTGGTCCACAGAAATACTTCACATTGGGATTGCCCACAGgAAGTACGCCATTGGGCTGCTACAAAAAGTTAATTGAATACCACAAGAGTGGGGATATCtcttttaaatatgtgaaaaccTTCAATATGGACGAATATGTTGGACTTCCGAGAGACCACCCGGAAAGTTACCACTCTTACATGTGGAACAATTTCTTCAAACACATCGATATCGATCCTGCCAACGCTCACATACTCAATGGCAATGCGGTCAACTTGCAAGCTGAATGTGAGGCGTTTGAAAAAAGCATTGCTGAAGCAGGTGGAATTGAGCTGTTTGTTGGAGGCATCGGTCCTGATGGACACATTGCTTTCAATGAGCCGGGGTCCAGTCTGGTCTCGAGGACCAGGGTGAAGACTTTAGCTAAGGACACGATCGTAGCCAATGCGAGGTTCTTCGGGAATGACCTGTCTAAAGTCCCTACCATGGCTTTAACAGTTGGAGTTGGGACGGTGATGGACGCTAAAGAGGTCTTGATTTTAATCACAGGGGCCCACAAGGCTTTTGCTTTATACAAGGCGATTGAAGAAGGCGTCAATCACATGTGGACCGTGTCAGCCTTCCAGCAGCACCCCCGGACTATCTTTGTCTGTGATGAAGATGCCACTCTAGAGCTGAGAGTGAAAACGGTGAAGTACTTTAAAGGGTTAATGCATGTACACAATAGACTTGTGGATCCCGTGCACAGTATGAAGAACTACAAAAACTGAAGATGGATGTTGCACCTGATGAGCAAGGACGAGAAAAACGAGAAATGCGTTGAACAACCTGTGCAGAAACGTAATGGGACATCATTTGTGTGGGCTACACCAACTACTTGTACTGTAAATTAACTGTTTAAAGGGGTCCTTTTGGTTTTTATGAGGtggaaaatgcattaataagGACTGCTGGATTGCAGAGCCTCTGGAGGTCTTCATTTATTAGCTCTTTGCACCAATGTGCGATGTCCACTACTTATTGTGTTCATCGCACAAAGCACAGAAATCTGACAGCTggccttgtttttttctttgtcaaataagtattttgaaatgtgtctttGGTGAAACATCACAGACGTCAACTGTTACATACCTTACTGCAGTTCCTTATTTTGTACATATACCcttatttgtattctgaaatgcTAAAATGATCGTAAACCATTCACAGGTGAGGTATTGCACCTCATGTTTGTCAGCCTCAATGTAGATATTCAACAGGTACCTTCACAGTGAAAACTGTTACATACTGAGCTGGAAACTGGTTACAGGAGTCGAGTAAGACTATTTGTTGTCTCCGATAATCACTCCTTTAAATATGGTCTCTGCTGTTAAATATGAACCCGATGCAGCGGGATGCAGTTCTTCAAGCGGGTCTTGCCCTTGTACTGTACTCTTAAGATTCACTCCTTGGCTGGTTTACTTATAAACTATGAGCCACAcgatgttattttttattatttttttactacacAAATCacatctgatttttattttctgagcatgcatcttttttttttttaccttttataAGCGCACTTGTCTGTACTTTAAAACAGATTCTCTCTTGCCAAAAGCAATGTTTATAGTGAGTATTGTTGGGATATTGAATAGTAATGCAATTCTATTTCaaaagtatgcattttttattgaacCTACAAAGGCTGATGATGTTTTGAAAAACCCTCACACTAAAATACTTTTCTTGAAATTGTATGCACTTAGTTAATAAAGAACTATCTTGTCAATgttgcttttatgttttctttaatatatatctataaccAATGTTCTCTGGAACCATGTCAtatgttgtatttcaatttatttatccA

Function

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004342 glucosamine-6-phosphate deaminase activity molecular_function

KEGG:

id description
K02564 nagB, GNPDA; glucosamine-6-phosphate deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116967 lncRNA upstream 499504 25953504 ~ 25953740 (+) True G93736
TU116966 lncRNA upstream 500867 25952068 ~ 25952377 (+) True G93735
TU116965 lncRNA upstream 501846 25951154 ~ 25951398 (+) True G93734
TU116964 lncRNA upstream 502872 25949736 ~ 25950372 (+) True G93733
TU116911 lncRNA upstream 935607 25517301 ~ 25517637 (+) True G93688
TU117087 lncRNA downstream 41082 26498712 ~ 26499170 (+) True G93842
TU117124 lncRNA downstream 458283 26915913 ~ 26916481 (+) True G93878
TU117138 lncRNA downstream 526339 26983969 ~ 26988035 (+) True G93891
TU117143 lncRNA downstream 538157 26995787 ~ 26997351 (+) False AMCG00017886
TU117195 lncRNA downstream 827092 27284722 ~ 27285066 (+) True G93938
AMCG00017871 mRNA upstream 202598 26236014 ~ 26250646 (+) True AMCG00017871
AMCG00017868 mRNA upstream 343755 26105497 ~ 26109489 (+) True AMCG00017868
AMCG00017864 mRNA upstream 384404 26051424 ~ 26068840 (+) True AMCG00017864
AMCG00017865 mRNA upstream 420883 26022958 ~ 26032361 (+) True AMCG00017865
AMCG00017863 mRNA upstream 430718 26016906 ~ 26022526 (+) True AMCG00017863
AMCG00017883 mRNA downstream 371946 26829576 ~ 26830170 (+) True AMCG00017883
AMCG00017882 mRNA downstream 413371 26871001 ~ 26890831 (+) True AMCG00017882
AMCG00017881 mRNA downstream 481744 26939374 ~ 26967252 (+) True AMCG00017881
AMCG00017886 mRNA downstream 535261 26992891 ~ 26997452 (+) True AMCG00017886
AMCG00017888 mRNA downstream 542932 27000562 ~ 27001794 (+) True AMCG00017888
TU116638 other upstream 1737623 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 5631297 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 5637698 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 6924951 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 7029565 19421310 ~ 19423679 (+) False AMCG00017710
TU117380 other downstream 2185100 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 2975782 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 5949799 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 6003668 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 6050060 32507690 ~ 32601449 (+) True G94857

Expression Profile