RNA id: AMCG00017877


Basic Information

Item Value
RNA id AMCG00017877
length 822
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00017877
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26437761 ~ 26439111 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCTAAAAGAAAACATCCTGCCCATCAGCGAGATGTCGAGTCCTTTCCCTGAGGTGGTGGAGCTGAACGTGGGAGGACAGGTGTACGTAACCAAGCATTCTACTCTTGTCAGCATTCCTGATACCACTCTGCACAGCATGTTCATCAAGAACCAGGTGAAAGACCTACCCCGGGACAACAGGGGCCGCTTCTTCATAGACCGGGATGGATTCCTCTTCAGGTACATTTTGGATTTCTTGAGGGACAAACAGCTAGTGCTGCCAGACCACTTCCCTGAGAAGGAGAGGCTCTTGAGGGAGGCAGAGCATTTCCAGCTCAGCGACCTGCTGAAGTTGCTCACACCCAAAGTCACCAAGCAGAGCTCGATGAACGACGAGGGATGCCAGAGTGACATCGAAGAAAACTCCCAAAGTAGTGACCTGGCCAGGACTGCTGCCTTAGATAAGAGATCTGGATTTATTACCATTGGCTACCGGGGCTCTTACACCATGGTGAGAGACAATCAGGCAGACGCCAAATTTCGCAGAGTGGCCAGGATTATGGTGTGTGGCCGGATCGCCCTGGCTAAGGAAGTTTTTGGTGAAACTTTAAATGAGAGTAGAGACCCTGACCGACCGCCTGAGAAGTATACCTCCCGGTTTTACCTGAAATTTACCTACCTGGAGCAGGCTTTCGACAGGCTGTCTGAAGCTGGATTTCACATGGTTGCTTGTAATTCCACCGGGACTGCTGCCTTCATCAACCAGTACAGGGATGATAAAATCTGGAGCAGCTACAccgaatatatatttttcaCGACAGAGCGCATGTTCGCATAA

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117058 lncRNA downstream 84037 26353517 ~ 26353724 (-) True G93816
TU117044 lncRNA downstream 179394 26258096 ~ 26258367 (-) True G93802
TU116973 lncRNA downstream 489167 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 490807 25945141 ~ 25946954 (-) False AMCG00017861
TU116944 lncRNA downstream 627908 25809544 ~ 25809853 (-) True G93718
TU117088 lncRNA upstream 59803 26498914 ~ 26499177 (-) True G93843
TU117271 lncRNA upstream 1323575 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 1339926 27779037 ~ 27784050 (-) True G94012
TU117305 lncRNA upstream 1399140 27838251 ~ 27839790 (-) False AMCG00017902
TU117306 lncRNA upstream 1399140 27838251 ~ 27839790 (-) False AMCG00017902
AMCG00017876 mRNA downstream 29768 26283965 ~ 26407993 (-) True AMCG00017876
AMCG00017872 mRNA downstream 243928 26112113 ~ 26193833 (-) True AMCG00017872
AMCG00017870 mRNA downstream 339833 26096440 ~ 26097928 (-) True AMCG00017870
AMCG00017869 mRNA downstream 354994 26076728 ~ 26082767 (-) True AMCG00017869
AMCG00017867 mRNA downstream 387814 26033115 ~ 26049947 (-) True AMCG00017867
AMCG00017874 mRNA upstream 5307 26444418 ~ 26452343 (-) True AMCG00017874
AMCG00017875 mRNA upstream 19107 26458218 ~ 26467868 (-) True AMCG00017875
AMCG00017878 mRNA upstream 203271 26642382 ~ 26650068 (-) True AMCG00017878
AMCG00017879 mRNA upstream 238146 26677257 ~ 26708132 (-) True AMCG00017879
AMCG00017880 mRNA upstream 355690 26794801 ~ 26820001 (-) True AMCG00017880
TU117034 other downstream 327687 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 329956 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 422269 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 422269 26012661 ~ 26015492 (-) False AMCG00017866
TU116217 other downstream 3115807 23318126 ~ 23321954 (-) False AMCG00017780
TU117337 other upstream 1664188 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 2435050 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 2830124 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 4188877 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 5823665 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile