RNA id: AMCG00017880


Basic Information

Item Value
RNA id AMCG00017880
length 1587
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00017880
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26794801 ~ 26820001 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTCTGCCAAGAAGGAGATGGTGTTTGCGATGTCCTCCAGTTACATTTCCACTCTGATCTACTTTCTCTGCGTGGCAGCTTGTATAAGGAAAAGCTCCGGACAGGTCAAAAAGGATGAAAAATTATATCCTGAAAATTTCACCCGGATCCTAGACCGACTTCTGGATGGTTATGACAACAGGCTGCGACCTGGATTTGGGGGTCCAGTTACAGAAGTGAAAACTGATATATATGTGACAAGCTTTGGACCAGTCTCTGACGTTGAAATGGAATATACAATGGATGTCTTCTTTCGCCAAACCTGGGTAGACAAGAGATTAAAGTATGACGGTCCCATTGAAATCCTAAGGCTAAACAACCTAATGGTCACAAAAGTGTGGACACCCGATACTTTCTTTAGAAATGGGAAAAAATCTGTCTCTCATAATATGACAGCCCCAAACAAGTTATTCCGAATCATGAAAAACGGTACCATTCTGTACACTATGAGGCATTTATGCCAACCATGTCAAAAAGATACATTAAATCATGTATTTGATTTCAGGCTCACAATAAGTGCTGAGTGTCCAATGAGACTTGTGGATTTCCCCATGGATGGACATGCTTGCCCTCTTAAGTTTGGAAGCTATGCATATCCAAAAACAGAGATGATCTATACCTGGACCAAAGGACCACAACACTCTGTGGAAGTACCTGAAGAGTCTTCGAGCTTGGTACAATATGATCTGATTGGGCAGACTGTCTCTAGTGAAACTGTGAAATCAATTACAGGAATCACAACTGTTCTGACCATGACAACTTTAAGTATAAGTGCCAGGCATTCTTTACCAAAAGTTTCTTACGCCACCGCGATGGATTGGTTCATAGCCGTCTGCTTTGCCTTTGTCTTCTCTGCTCTCATCGAGTTTGCTGCGGTGAACTACTTCACAAATACTCAAATGGAAAAGGCAAAAAAGAAGCAGATTAAATGCCCAGCGGCGCCTAAAGCTACTCCGCTAAAGAAGGCAAATGACACTGAAGAAGTACTACAGAATCCAGATTCGAACGGCAATTTGAGGAAAAGAATGAACTACATGACAGATTCAAACAGTGACCAAAGAACTGACACTGGGAACAATAACAAGGGAGGCATTGCGAGGCAGTCTTTAGTTGGCCAAGTTCCTTCATCAGCCGTTTCGTCCTCTGTTCCTCACTCGAGTCCCAATCCCTTCAGCCATCCCAATTTAGCCCCGGCTACACTGCTATCGAGAAGCACTCCTCCGGCACCCCCCTCTACCCCAACTCTGCCCAGTCGCATACCGACCAATGTTTTCGTTGGCTCTGCCTCTATCCAGCATTTGCTTGGGCCCAAACTTGAACACATTCAGATGACAGCAAACAAAATggaattaaatctaaaacagGCTTCGCCCAGTCCTTTGCCGCCAGCGCCAACCCCAGCTGCCAGCGGAGCGAACGGAACCAGTAAAATTGACAAGTATGCACGTATTCTTTTCCCGGTTTCATTTGGGGCTTTTAACATGGTTTACTGGGTAGTCTACTTATCGAAAGACACCATGAAGTCCCCAGATGGTTCAAACTAG

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117088 lncRNA downstream 295624 26498914 ~ 26499177 (-) True G93843
TU117058 lncRNA downstream 441077 26353517 ~ 26353724 (-) True G93816
TU117044 lncRNA downstream 536434 26258096 ~ 26258367 (-) True G93802
TU116973 lncRNA downstream 846207 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 847847 25945141 ~ 25946954 (-) False AMCG00017861
TU117271 lncRNA upstream 942685 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 959036 27779037 ~ 27784050 (-) True G94012
TU117305 lncRNA upstream 1018250 27838251 ~ 27839790 (-) False AMCG00017902
TU117306 lncRNA upstream 1018250 27838251 ~ 27839790 (-) False AMCG00017902
TU117307 lncRNA upstream 1018250 27838251 ~ 27839790 (-) True AMCG00017902
AMCG00017879 mRNA downstream 86669 26677257 ~ 26708132 (-) True AMCG00017879
AMCG00017878 mRNA downstream 144733 26642382 ~ 26650068 (-) True AMCG00017878
AMCG00017875 mRNA downstream 326933 26458218 ~ 26467868 (-) True AMCG00017875
AMCG00017874 mRNA downstream 342458 26444418 ~ 26452343 (-) True AMCG00017874
AMCG00017877 mRNA downstream 355690 26437761 ~ 26439111 (-) True AMCG00017877
AMCG00017885 mRNA upstream 102793 26922794 ~ 26930593 (-) True AMCG00017885
AMCG00017884 mRNA upstream 158059 26978060 ~ 26985839 (-) True AMCG00017884
AMCG00017887 mRNA upstream 168293 26988294 ~ 26992258 (-) True AMCG00017887
AMCG00017891 mRNA upstream 470552 27290553 ~ 27310145 (-) True AMCG00017891
AMCG00017896 mRNA upstream 548218 27368219 ~ 27395660 (-) True AMCG00017896
TU117034 other downstream 684727 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 686996 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 779309 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 779309 26012661 ~ 26015492 (-) False AMCG00017866
TU116217 other downstream 3472847 23318126 ~ 23321954 (-) False AMCG00017780
TU117337 other upstream 1283298 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 2054160 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 2449234 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 3807987 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 5442775 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile