RNA id: AMCG00017883


Basic Information

Item Value
RNA id AMCG00017883
length 306
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00017883
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26829576 ~ 26830170 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGAGAGTTCAAGACCGAGGATGTTTGGGGATTTTATCTCTTCCCTTGATGGTCGCCATGGTCTGCTGTGCGCAAAGCGCTAATGAGCCCAGCAACATGTCCTATGTGAAAGAAACCGTGGACAAATTGCTCAAAGGATATGACATTCGCTTAAGGCCTGATTTTGGAGGTCCCCCTGTAGATGTTGGGATGAGCATAGACATCGCCAGCATTGACATGGTCTCAGAAGTCAATATGGtgagtacatttaaatattatgcaAGTCATCAATGTAGACAGTATGACAAATGCAAAAGACTGTGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117087 lncRNA upstream 330406 26498712 ~ 26499170 (+) True G93842
TU116967 lncRNA upstream 875836 25953504 ~ 25953740 (+) True G93736
TU116966 lncRNA upstream 877199 25952068 ~ 25952377 (+) True G93735
TU116965 lncRNA upstream 878178 25951154 ~ 25951398 (+) True G93734
TU116964 lncRNA upstream 879204 25949736 ~ 25950372 (+) True G93733
TU117124 lncRNA downstream 85743 26915913 ~ 26916481 (+) True G93878
TU117138 lncRNA downstream 153799 26983969 ~ 26988035 (+) True G93891
TU117143 lncRNA downstream 165617 26995787 ~ 26997351 (+) False AMCG00017886
TU117195 lncRNA downstream 454552 27284722 ~ 27285066 (+) True G93938
TU117233 lncRNA downstream 642711 27472881 ~ 27697379 (+) True AMCG00017898
AMCG00017873 mRNA upstream 371946 26453244 ~ 26457630 (+) True AMCG00017873
AMCG00017871 mRNA upstream 578930 26236014 ~ 26250646 (+) True AMCG00017871
AMCG00017868 mRNA upstream 720087 26105497 ~ 26109489 (+) True AMCG00017868
AMCG00017864 mRNA upstream 760736 26051424 ~ 26068840 (+) True AMCG00017864
AMCG00017865 mRNA upstream 797215 26022958 ~ 26032361 (+) True AMCG00017865
AMCG00017882 mRNA downstream 40831 26871001 ~ 26890831 (+) True AMCG00017882
AMCG00017881 mRNA downstream 109204 26939374 ~ 26967252 (+) True AMCG00017881
AMCG00017886 mRNA downstream 162721 26992891 ~ 26997452 (+) True AMCG00017886
AMCG00017888 mRNA downstream 170392 27000562 ~ 27001794 (+) True AMCG00017888
AMCG00017889 mRNA downstream 439065 27269235 ~ 27278351 (+) True AMCG00017889
TU116638 other upstream 2113955 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 6007629 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 6014030 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 7301283 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 7405897 19421310 ~ 19423679 (+) False AMCG00017710
TU117380 other downstream 1812560 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 2603242 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 5577259 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 5631128 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 5677520 32507690 ~ 32601449 (+) True G94857

Expression Profile