RNA id: AMCG00017885


Basic Information

Item Value
RNA id AMCG00017885
length 534
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00017885
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26922794 ~ 26930593 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTCCACCGAGTAATCGATCGCGTCTGTGGGCGAGATCCTCTGCGGTTTCATGACTACAGCGGCGTCTGGGACCTGGCAGAGTGGCTTGAGTTAATCGAGGTGCTTTCATCTGTATTCAGAGCGGCTGTAGGAAAGAAGATGTCTGATgaagagGTGCAGCAATCCATAAGCGAACTTGACCCCAGCTATCAAGAAGGGCTACTGAAGTGTCTGAAGGGCAGGAGGGAGGAAATCCGACAAGCACTGATTGAGAAGACAAACGCAGTTTCATCGACGCAGCTGCAGAATTTTGACTGGCAGTTAAAGTTGGCCCTGTCAAGCGATAAGATCTCGTCGCTTCAGACGCCGCTGTTAAACCTCGATTTGGATGTCAAAGAAAATGGAGCACTTAAGCCTGTGTCCATAGAGATGAATCGTGAGGAGCTGCAGACCTTAATAAACTCGCTGGAGGCAGCAAACAAGGTATCTTTTCTTAAACACAATTCAAGACACTACAGCTCCACAGATGATGATATAGTGCTGAGAAGTTAA

Function

GO: NA

KEGG:

id description
K22564 COMMD8; COMM domain containing 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117088 lncRNA downstream 423617 26498914 ~ 26499177 (-) True G93843
TU117058 lncRNA downstream 569070 26353517 ~ 26353724 (-) True G93816
TU117044 lncRNA downstream 664427 26258096 ~ 26258367 (-) True G93802
TU116973 lncRNA downstream 974200 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 975840 25945141 ~ 25946954 (-) False AMCG00017861
TU117271 lncRNA upstream 832093 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 848444 27779037 ~ 27784050 (-) True G94012
TU117305 lncRNA upstream 907658 27838251 ~ 27839790 (-) False AMCG00017902
TU117306 lncRNA upstream 907658 27838251 ~ 27839790 (-) False AMCG00017902
TU117307 lncRNA upstream 907658 27838251 ~ 27839790 (-) True AMCG00017902
AMCG00017880 mRNA downstream 102793 26794801 ~ 26820001 (-) True AMCG00017880
AMCG00017879 mRNA downstream 214662 26677257 ~ 26708132 (-) True AMCG00017879
AMCG00017878 mRNA downstream 272726 26642382 ~ 26650068 (-) True AMCG00017878
AMCG00017875 mRNA downstream 454926 26458218 ~ 26467868 (-) True AMCG00017875
AMCG00017874 mRNA downstream 470451 26444418 ~ 26452343 (-) True AMCG00017874
AMCG00017884 mRNA upstream 47467 26978060 ~ 26985839 (-) True AMCG00017884
AMCG00017887 mRNA upstream 57701 26988294 ~ 26992258 (-) True AMCG00017887
AMCG00017891 mRNA upstream 359960 27290553 ~ 27310145 (-) True AMCG00017891
AMCG00017896 mRNA upstream 437626 27368219 ~ 27395660 (-) True AMCG00017896
AMCG00017894 mRNA upstream 469911 27400504 ~ 27408557 (-) True AMCG00017894
TU117034 other downstream 812720 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 814989 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 907302 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 907302 26012661 ~ 26015492 (-) False AMCG00017866
TU116217 other downstream 3600840 23318126 ~ 23321954 (-) False AMCG00017780
TU117337 other upstream 1172706 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 1943568 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 2338642 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 3697395 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 5332183 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile