RNA id: AMCG00017888


Basic Information

Item Value
RNA id AMCG00017888
length 404
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00017888
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27000562 ~ 27001794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTTATTAGCCTGCTGAGCAACATTGTTGTGCTAGCCATGTTTGTCAAGTTTAAGGAACTGCGAACAGCAACCAACGCCATCATTATCAACCTTGCTTTCACCGACGTCGGTGTCAGTGGCATTGGTTACCCAATGTCTGCGGCCTCGGACATCCACGGAAGCTGGAAGTTTGGATATAACGGTTGTCAGGTTGGTAGCACAGTCTATATGATGAATATGAGCGACGCCAGGTCCATGAATAGGATTGAAACCAGCATTGGTTTGCTGACTGTGGTTGCCCTTGACCGCTATTTCACCATATGCAGACCTGATATAGGACAGAAAATGACCAATCGTACGTACTCTCTCCTGATTAGTGCTGCCTGGATCAATGCACTATTTTGGTCTGCCATGCCTGTTGTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04253 RRH; visual pigment-like receptor peropsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117143 lncRNA upstream 3211 26995787 ~ 26997351 (+) False AMCG00017886
TU117138 lncRNA upstream 12527 26983969 ~ 26988035 (+) True G93891
TU117124 lncRNA upstream 84081 26915913 ~ 26916481 (+) True G93878
TU117087 lncRNA upstream 501392 26498712 ~ 26499170 (+) True G93842
TU116967 lncRNA upstream 1046822 25953504 ~ 25953740 (+) True G93736
TU117195 lncRNA downstream 282928 27284722 ~ 27285066 (+) True G93938
TU117233 lncRNA downstream 471087 27472881 ~ 27697379 (+) True AMCG00017898
TU117246 lncRNA downstream 696930 27698724 ~ 27700728 (+) True G93986
TU117309 lncRNA downstream 839259 27841053 ~ 27841261 (+) True G94039
TU117331 lncRNA downstream 1095939 28097733 ~ 28099214 (+) True G94055
AMCG00017886 mRNA upstream 3110 26992891 ~ 26997452 (+) True AMCG00017886
AMCG00017881 mRNA upstream 33310 26939374 ~ 26967252 (+) True AMCG00017881
AMCG00017882 mRNA upstream 109731 26871001 ~ 26890831 (+) True AMCG00017882
AMCG00017883 mRNA upstream 170392 26829576 ~ 26830170 (+) True AMCG00017883
AMCG00017873 mRNA upstream 542932 26453244 ~ 26457630 (+) True AMCG00017873
AMCG00017889 mRNA downstream 267441 27269235 ~ 27278351 (+) True AMCG00017889
AMCG00017890 mRNA downstream 349894 27351688 ~ 27360732 (+) True AMCG00017890
AMCG00017892 mRNA downstream 409566 27411360 ~ 27415163 (+) True AMCG00017892
AMCG00017898 mRNA downstream 667404 27669198 ~ 27692155 (+) False AMCG00017898
AMCG00017897 mRNA downstream 743119 27744913 ~ 27768328 (+) True AMCG00017897
TU116638 other upstream 2284941 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 6178615 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 6185016 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 7472269 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 7576883 19421310 ~ 19423679 (+) False AMCG00017710
TU117380 other downstream 1640936 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 2431618 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 5405635 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 5459504 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 5505896 32507690 ~ 32601449 (+) True G94857

Expression Profile