RNA id: AMCG00017895


Basic Information

Item Value
RNA id AMCG00017895
length 1836
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00017895
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27427479 ~ 27432576 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAACCATCCACTTCAACAAGCGTTCAGAGGTGCACCATGGGGAGCACAATGAGTGCCACGACCCGCTCGGTATATTACGAGCTGATGTTGGAAGGGCAGGTGTGCGATGTGGTGATAATGGTGGAGGGCACAGCATTCAATGCCCACAAGATCATCTTGTGTGGCTGCAGCGACTATTTCCGAGTCCTGTTCACCAGCGCTGGCTGGaacacagagaggagggaggtcAACATCCCCAGCGTCTCCCCAGAGATGATGAAACTCATCATCCAGTATGCCTACACCCTCGCTGTACCCATCTCCCCCAACAATGTGCAGGAGCTATTGGTAGCGGCCAATCAGTTGGCAGTGCTGGGTCTCCTGCGAATCTGCTGCAACTTCCTGGAGGCGCAGCTGTGCATTGAGAACTGCATCGGCATCTCCCAGTTCGCCGAATTGCACTTCTGCACCGATCTCCATCGGGTTGCCCAATGCTACGTCCGGCACCACTTTGAACCTGTGGCCAAGGCCTGCGAGGAGTTCCTGGCGCTCTCTCTGGACCAGCTAATTAGCATCATCGAAAAGGACGACCTCAACGTCAAGGAGGAGGACGTGGTCTTTGAGGCCATCCTGCGCTGGATCGACCACGCTCCCAGCGAGCGGCGCTGCCACATCTCCGTCCTGCTGCCCAAGGTGCGGATGGCACTCATGGAGTCAGAATACTTCATGACCAAAGTGAAGAACAACGAGCTGGTGAAGCAGACCGATGAGTGCAAGCCTATCGTCATCAATGCGCTCAAGGCCATGTACGACCTCAACATGAATGGCCAGTCTGACTTGGACTTCTGCAACCCCATGACCCGGCCGCGGCTTCCCTATGCCATCCTGTTGTCGATCGGGGGCTGGAGTGGTGACAGCGCAACCAATGGTATGGAGGCCTACGACTGCAGGTATAACCAATGGGTGGATGTCACCATCCCAGAGGAGAGACCACGGGCCTACCATGGGGTCGCCTACCTCAAGGGCTGGGTGTACTGCGTGGGCGGCTTCGACGGCGTGGATTACTTCAGCAGCGTGCGCAAGTTCGATCCTGTGGCGTACACTTGGCTTGAGGTAGCCCCCATGCACTACCAGCGCTGCTACGTCAGCGTGGTTGTGCTGGACGGCTTCATCTACGCCATGGGGGGCTTCAACGGCGATGTGCGGCTCAACACAGCTGAGCGCTACAAGCCCAAGACCAACCAGTGGACCCTGATCGCACCCATGAACGAGCAGAGGAGCGACGCCAGCGCTACCACCCTACACGGCAAGGTGTATATCTGCGGGGGATTCAACAGGAACGGGTGTCTCTGGACATCAGAAACGTACAGCCCAGAGACCAACCAGTGGACTGCCATCGCCCCCATGTTGAGCAGGCGCACCGGGGTGGGCGTGATTGCCTTTGAGGACCACGTGTATGCGGTGGGTGGCTGTGACGGGACGAACCGGCTGCAGACCGTAGAGGCCTACAACCCGCTGACCAACAGCTGGCGCCCAATACCCAGCATGTTCGTCACGCGCAGCAACTTCGGCATTGAGGTGGTGGAAGACCGCTTGTTTGTGGTGGGCGGCTTCAATGGCATCACCACCACTGCCTCTGTGGAGTGCTATGAAAGAGAGGCAAACGAGTGGTACGATGTTTGTGACATGAGTTTCAACCGCAGCGCACTCAGCTGCTGTGTGCTGCCAGGGCTGCCAAACGTGGCCGACTACGCCGTCCCCCGAGATGCCCTGCTGCTCGACTCTCAGCAAGAGGACACACCCTCCTACACCTACAGCCTTCCCTCCTTACCGTTCCCAGACTATCATTAA

Function

GO: NA

KEGG:

id description
K10448 KLHL10; kelch-like protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117088 lncRNA downstream 928302 26498914 ~ 26499177 (-) True G93843
TU117058 lncRNA downstream 1073755 26353517 ~ 26353724 (-) True G93816
TU117044 lncRNA downstream 1169112 26258096 ~ 26258367 (-) True G93802
TU116973 lncRNA downstream 1478885 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 1480525 25945141 ~ 25946954 (-) False AMCG00017861
TU117271 lncRNA upstream 330110 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 346461 27779037 ~ 27784050 (-) True G94012
TU117305 lncRNA upstream 405675 27838251 ~ 27839790 (-) False AMCG00017902
TU117306 lncRNA upstream 405675 27838251 ~ 27839790 (-) False AMCG00017902
TU117307 lncRNA upstream 405675 27838251 ~ 27839790 (-) True AMCG00017902
AMCG00017893 mRNA downstream 1247 27415574 ~ 27426232 (-) True AMCG00017893
AMCG00017894 mRNA downstream 18922 27400504 ~ 27408557 (-) True AMCG00017894
AMCG00017896 mRNA downstream 31819 27368219 ~ 27395660 (-) True AMCG00017896
AMCG00017891 mRNA downstream 117334 27290553 ~ 27310145 (-) True AMCG00017891
AMCG00017887 mRNA downstream 435221 26988294 ~ 26992258 (-) True AMCG00017887
AMCG00017899 mRNA upstream 266325 27698901 ~ 27723731 (-) True AMCG00017899
AMCG00017902 mRNA upstream 405678 27838254 ~ 27839681 (-) False AMCG00017902
AMCG00017903 mRNA upstream 409636 27842212 ~ 27844771 (-) True AMCG00017903
AMCG00017906 mRNA upstream 666329 28098905 ~ 28120641 (-) False AMCG00017906
AMCG00017907 mRNA upstream 1001456 28434032 ~ 28443288 (-) True AMCG00017907
TU117034 other downstream 1317405 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 1319674 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 1411987 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 1411987 26012661 ~ 26015492 (-) False AMCG00017866
TU116217 other downstream 4105525 23318126 ~ 23321954 (-) False AMCG00017780
TU117337 other upstream 670723 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 1441585 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 1836659 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 3195412 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 4830200 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile