RNA id: AMCG00017896


Basic Information

Item Value
RNA id AMCG00017896
length 3381
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00017896
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27368219 ~ 27395660 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTCAGGATTATGTTACTTGCTGTGTTTTTGACAGTGGTGGTCAATTTTGTTGTGGCAATCAACAGTTTGGTTCCTGGAAAGGCATGCTCGAATGGATACCAATTGGCTGCAGATAATTCAACCTGTGTTGctcCAGAGCCTTTTCTGATCTTCAGCCTTGGCAATGCCATATTCAGCACTGATGGGGATGGATCAAATAACAAGACGATTGTAGCAAAGGCTGGGATTTCAGTCTTGCTGGACTTCCactacagagagagaaggatatACTGGCTGGACTCTGAGACAGGGTTCATACAGAGAGCCTTCATGAATGGCACGAAGAAAGAGCAAGTGTATTCATTGGGGAAAGGCGTATCGGGCTTTGCTGTGGACTGGATACAGAATAATGTAATCTGGACTAATCATCAAAAGGGGAACATTGAAAGAGCTGGGACAGATGGGAAGAATGCAAGGGTGCTTCTACAGAACCTCTCTCAACCCAGTGGCATCATTGTGGATCCAAATGCCAAGTTTATATTTTGGATTTCAGATGGAACGATGGTCCATCAGGCAAATCTCGAAGGGGAAATGACAACCACAGTTTTCAAGACAACTTCCAAACTTCAAACACTTACATTAGATGTTTTTGACAAAAGGCTGTTCTGGGTCCAGTCCAGTTCAGAGGATAAGAGCACTATTGGATCCTGTGACTACAATGGGAATTTTATTCAAACAATGAAGCCATCATTACAATCACAACCACTGTGGATGTCTGTGTTTTTGGAGCACATATACTTCACGGATGGGGAGACTGGAGGCATAAAAAGAGAGAACAAATACACAGGCAAAGACAGTGTGAACATCAGTGGACCACATTTGTTTAATCCGCCAGCTGCTATCAGTGTGGTTCACCCACTCAAACAGCCCAGTGCCGAAGCCTCTGCACTCACAGCAGACCAGCATGACTGCTCTTCTCTGCGGTGTGAAGCCAACGCTAAGTGCTTTCCAGAGCTGGGGGGCGCTGTTTGCCAGTGTTTGGAGGGCTTCTCTGGGGATGGCGAAGTGTGCGTAGacaTCGACGAGTGTAGACTGGGGACCCACAAGTGTGATGCCCATGCAGACTGTGTTAACGCTGAGGGGACGTACGTGTGCAGGTGTATCACTGGGTACACTGGCATGGGATTCGAGTGTGAAGCCGTTTACTGGTGCCGCGCCACTGCTGTGTGCATTGCAGAATCGATTGCCTCTACCTCTGAGCCGGAGACCGCCAGCCCTCCTGTAACGACGACACACTGGCAGAACAACCTCCCGAAGACCTGCCCTCCTGCCTATGAGACGTACTGCCTGTACGGAGGGGTCTGCTTTTACATTCCAGACCTCGAGTCCTACGCCTGCAAGTCAAAGAGATATGCCAGAAGAAGCTCCTCAGTTGATGAAATGAGTGACCTCAGCTGCAGTATCGACAGTGTATCCGgcacaacaaccaccaccacacagCGGCTGTATGTTGTGCTGAAGCGGGGTTCAAACGGGGAAAGCAAAGCTATCCATGTAGTTGGTTGTAAGCCAAGAGCACCTTGTCCTTCCTCCTCATCAGAAACTGGAGACAGTTTTGTGTCGGAGGAAGACGACACTTCACCAAGAGAGAAGCAAAGTGCAGGGTTCCCCTCCGAGTTGTCTGGGGGTCTTCACCAACACACACTGGCCACCAGCGTCACTGACCTCCGCCTGAAGCACAATCCTCACCTGGAGGACGGTCCGGTGGCTGGGAGTGGGCTGACCACGGTGTCGCAGCCGGTCTGAACCCTGGCTCTGTCAGTATTGTACATTACTCCTCACTGAGGACTTGCAAAGAAACGTGAATACATGCCAGTGGAGGACAGTTGTACACAGCAGGTTTAGCTCTATGCATGCATCTCTGCATTACAAATAAGCTACAGAATGAGGGAGGGGAGTcaagggattaaaaaaaatatacaaaaagctatttatttGTCCGCAGTGCTGTCTGTTTGTTGCTGCTCTCCAGGATGTcctcatttctttctttcttcttgacATTTTATGATGAAAAAAACCTCAGACTTccatatagatttattttttcactaaaCATCTGGAAAAACATTGACTTACATGCTTTtggtttgctttgctttgctttgcattttgttgttgttgttgtgtttgtaaagAAAGCATCCTCCAGTTTTCCCTTAGATACACAGGTTTATGACAATTACTACATGGGAAAACATGGAGGTGTACTTATGTTGGTCTACTAAGTAACTGTTTAGTGTATGTAAACTCTAATCTCTATATGTTACAGTTATCATAAACTGTCCTGAAACTGGATTTGAAGTctgtttttatagtttattttttatttttatgttttattgtaattataataatagaaaacccatagtttttgctgttttttgtctACAGAGGAAGGTGCAAAGCTATATAAGATTACTTACACTTATGTGCAGACTACTAAACTACACTATTGACTTAGTTAAATTAATGTCAGTAGACTAATGGAAATTTACTACTAGCATCTTATTTTGGTTTAGATTGTTTTATTCAAAGTTCAATATTTTACCAATAATGTGACTGGAAGAGATAAGCAATGTATGCTTAACTAAGTGACTTGCGTTTTGCTTTAACTAGAGcaatatctttaaaaacaaaaccataagaCAATCCAATCCTTGCTTTACTATATTTGTGATCATACAAAATGAATATCAAGAGCTCTTTTGAATGTACACCAATGAAGTGATTCATAAAGTGTTAGCATATGGGTAGATTGTATTTGGTGAGAGTTCATTGGGCTCTCAGTGAGTTTCTCTGCCACGGTGCGGGAGCGAACAGTGCTGTGATTCAGGCTAGGCATCCATCCCTGGAGTCGAGCACAGTACTCATATTGTAATGCCAGGGGCAGATGAATGCATACAAGCCTCATATGGTATTTAAAACCTTTAATAACATGCTCATTGTTGGGCTTTGCGAGCGAGAGGTCAATAGCTGATTGCTCATTGCAAAAAAGGACTCTTATCTCAGTTTTATACCagtagtaaataaatatttattcaaatattgaTAAGTATGAAATCCTGCAGAGTACTCATTAAATGCCTCATGgcatttaatatgtttaactGCCCCACTATATTGTAGGTTTTACCTTCTTTTTGTGTTAATAAATCCAATGTAGGTTTCCTATTATATAAGCTAAAACCTCACcattctgctgctgctgtaacttaaatatctatttttaatgcaaacgtgtcatttgttttgtcttttcatgAGCTCTTTAATGCTTCAGTTACTCTGAAATGCAGCTTGTTCTATTTCTGCcagtaaataaatcattatataaaaa

Function

GO: NA

KEGG:

id description
K04357 EGF; epidermal growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117088 lncRNA downstream 869042 26498914 ~ 26499177 (-) True G93843
TU117058 lncRNA downstream 1014495 26353517 ~ 26353724 (-) True G93816
TU117044 lncRNA downstream 1109852 26258096 ~ 26258367 (-) True G93802
TU116973 lncRNA downstream 1419625 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 1421265 25945141 ~ 25946954 (-) False AMCG00017861
TU117271 lncRNA upstream 367026 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 383377 27779037 ~ 27784050 (-) True G94012
TU117305 lncRNA upstream 442591 27838251 ~ 27839790 (-) False AMCG00017902
TU117306 lncRNA upstream 442591 27838251 ~ 27839790 (-) False AMCG00017902
TU117307 lncRNA upstream 442591 27838251 ~ 27839790 (-) True AMCG00017902
AMCG00017891 mRNA downstream 58074 27290553 ~ 27310145 (-) True AMCG00017891
AMCG00017887 mRNA downstream 375961 26988294 ~ 26992258 (-) True AMCG00017887
AMCG00017884 mRNA downstream 382380 26978060 ~ 26985839 (-) True AMCG00017884
AMCG00017885 mRNA downstream 437626 26922794 ~ 26930593 (-) True AMCG00017885
AMCG00017880 mRNA downstream 548218 26794801 ~ 26820001 (-) True AMCG00017880
AMCG00017894 mRNA upstream 4844 27400504 ~ 27408557 (-) True AMCG00017894
AMCG00017893 mRNA upstream 19914 27415574 ~ 27426232 (-) True AMCG00017893
AMCG00017895 mRNA upstream 31819 27427479 ~ 27432576 (-) True AMCG00017895
AMCG00017899 mRNA upstream 303241 27698901 ~ 27723731 (-) True AMCG00017899
AMCG00017902 mRNA upstream 442594 27838254 ~ 27839681 (-) False AMCG00017902
TU117034 other downstream 1258145 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 1260414 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 1352727 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 1352727 26012661 ~ 26015492 (-) False AMCG00017866
TU116217 other downstream 4046265 23318126 ~ 23321954 (-) False AMCG00017780
TU117337 other upstream 707639 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 1478501 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 1873575 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 3232328 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 4867116 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile