RNA id: AMCG00017898



Basic Information


Item Value
RNA id AMCG00017898
length 1074
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00017898
representative False

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27472881 ~ 27697379 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCTCATTAGCAGAGCTGTGGACAGAGCAGTGCCTGAACTTCTGCCTCCGCACTGATCACTATCTCCAGCTCACTTCGTGTGACGGGTCTGAAGAAAACCACTCAGAACTCCAGCACCACCCCTGGACACCCCGGTCCTCAGATCTCAGTCCCACTGATGTCTTCAAGGATACGGAGCTGGTGATCAAAGGCAAAGAGTCGGGGAACGCCTGGGAGCGAAGTGAACTCGGGGGCAGCAGAGACATTGCAGATTACCTGCCCAAGAGGAAGAGGTGGCCCTTTGTACTGGTTGTGTTTCTGGGCTGTGTTCGGTACCGCTGTTACTCTTCTCACGCCGCCCCACTTTGTTTCACAGACAGCGTCGAAGATGAGCTGGAACTGGCCACCGTCCGCCATCGTCCCGAGGGGCTGGAGCAGCTGGAGGCACAGACCAAATTCACAAAGAAGGAGCTGCAGATTCTCTACCGGGGATTTAAGAACGTGAGTGCGCCTTCAGTCGCAGGACTCATAATCACAGCCTGTCTGGAGCTGGGCCAGCAGCGCGCCATCTCCTCTAGCATCTCCGACAGCTTGGTCATCTGTGGTCATCCAGATGTGACCGGCTTGCAGAGAAAGGTCAGGACGGAATGTCCTAGTGGTGTGGTCAATGAAGAAAACTTTAAAGAGATTTACTCGCAGTTCTTTCCTCAGGGAGATGCAACAACATATGCACACTTTCTCTTCAACGCGTTCGACACCGATCACAACGGCTCAGTGAGTTTCCAGGACTTTGTCATGGGCCTGTCCATCCTGCTCCGGGGGTCGGTGCACGAGAAGCTCAACTGGGCCTTCAACTTGTATGACATCAACAAAGATGGATACATCACCAAGGAGGAGATGCTCGACATTATGAAGGCTATTTACGACATGATGGGCAAATGCACGTACCCGGTCCTCCGAGAGGAGACACCACGGCAGCACAAAatggacaaaaataaagatGGCGTCGTCACCATCGATGAGTTCATTGACTGCTGTCAAAAGGATGAAAACATCATGAGATCGATGCAGCTGTTTGAAAACGTCATCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117195 lncRNA upstream 384132 27284722 ~ 27285066 (+) True G93938
TU117143 lncRNA upstream 671847 26995787 ~ 26997351 (+) False AMCG00017886
TU117138 lncRNA upstream 681163 26983969 ~ 26988035 (+) True G93891
TU117124 lncRNA upstream 752717 26915913 ~ 26916481 (+) True G93878
TU117087 lncRNA upstream 1170028 26498712 ~ 26499170 (+) True G93842
TU117246 lncRNA downstream 6569 27698724 ~ 27700728 (+) True G93986
TU117309 lncRNA downstream 148898 27841053 ~ 27841261 (+) True G94039
TU117331 lncRNA downstream 405578 28097733 ~ 28099214 (+) True G94055
TU117333 lncRNA downstream 408578 28100733 ~ 28102094 (+) True G94057
TU117345 lncRNA downstream 750611 28442766 ~ 28444925 (+) True G94069
AMCG00017892 mRNA upstream 254035 27411360 ~ 27415163 (+) True AMCG00017892
AMCG00017890 mRNA upstream 308466 27351688 ~ 27360732 (+) True AMCG00017890
AMCG00017889 mRNA upstream 390847 27269235 ~ 27278351 (+) True AMCG00017889
AMCG00017888 mRNA upstream 667404 27000562 ~ 27001794 (+) True AMCG00017888
AMCG00017886 mRNA upstream 671746 26992891 ~ 26997452 (+) True AMCG00017886
AMCG00017897 mRNA downstream 52758 27744913 ~ 27768328 (+) True AMCG00017897
AMCG00017901 mRNA downstream 81698 27773853 ~ 27787082 (+) True AMCG00017901
AMCG00017900 mRNA downstream 119067 27811222 ~ 27837126 (+) True AMCG00017900
AMCG00017904 mRNA downstream 215589 27907744 ~ 27909564 (+) True AMCG00017904
AMCG00017905 mRNA downstream 224271 27916426 ~ 27919140 (+) True AMCG00017905
TU116638 other upstream 2953577 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 6847251 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 6853652 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 8140905 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 8245519 19421310 ~ 19423679 (+) False AMCG00017710
TU117380 other downstream 950575 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 1741257 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 4715274 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 4769143 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 4815535 32507690 ~ 32601449 (+) True G94857

Expression Profile