RNA id: TU117233


Basic Information

Item Value
RNA id TU117233
length 5985
lncRNA type sense_over
GC content 0.46
exon number 8
gene id AMCG00017898
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27472881 ~ 27697379 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcagcgccgTGCTTGTTGGCGTGTGCGTGCACGCAGTTGGCTGCAAAATGGACAACAGGGAGAAGCGAAAATCAGACACAAGACCAACACCTGTACTAACTGAGAGGAGAGCATCGACAGCCTCGATAACAGCACGGATAGAGCAGAGAGCAGTGCTGGCACGGCTGTAGACAGCGTCGAAGATGAGCTGGAACTGGCCACCGTCCGCCATCGTCCCGAGGGGCTGGAGCAGCTGGAGGCACAGACCAAATTCACAAAGAAGGAGCTGCAGATTCTCTACCGGGGATTTAAGAACGAATGTCCTAGTGGTGTGGTCAATGAAGAAAACTTTAAAGAGATTTACTCGCAGTTCTTTCCTCAGGGAGATGCAACAACATATGCACACTTTCTCTTCAACGCGTTCGACACCGATCACAACGGCTCAGTGAGTTTCCAGGACTTTGTCATGGGCCTGTCCATCCTGCTCCGGGGGTCGGTGCACGAGAAGCTCAACTGGGCCTTCAACTTGTATGACATCAACAAAGATGGATACATCACCAAGGAGGAGATGCTCGACATTATGAAGGCTATTTACGACATGATGGGCAAATGCACGTACCCGGTCCTCCGAGAGGAGACACCACGGCAGCACGTGGAGATATTCTTCCAGAAAatggacaaaaataaagatGGCGTCGTCACCATCGATGAGTTCATTGACTGCTGTCAAAAGGATGAAAACATCATGAGATCGATGCAGCTGTTTGAAAACGTCATCTAGCACCCGAGGCGCCAGGAGTCCCGGCACAGAGGCGTCCCAGGACTCGTCTGCAGTCTCTTCGCAGGACTGACACTTCATACGTACTTCAAAAGAGCAGCAATATGCTGCgaaatatatatctctatatatattatgcaaataAGCTTCTTCAGCTGTAAGCTTTCATTtgtcctttaatttatttattcttcttcgTGCAGTGATGCATCGGCCCTTAATCCCAACTTTGACCCTTTTTTaggatttatttatgtctgtatttatttatttaaaagaattaTATACGATGACCTAGAAAGATATGTGCATAAATAAAGTCTGGCATAAAGTGGATGTGAGGACGGCATCGTCAGTGATTTGGGTCTCGATTTGATCAGCCGCAGCTCTGTGAGAGACCAGCTGCTCGTCTCCAGTGTTTTGGGCTTTGTGTCCCACACTTGTCCGTGTCTCGGCATTGACCCCCGAAACTGGAGCTTCGTACGACTCGAGGGAGATCTTCCATTTGATAAACAACTCcaactgtgaaaacaaaagcagtggCAGTGGATTCGTCATCGCCCAAAGCACCAGGCTCTCTCAAAATGACTTGTATAAACACCCCTGAAGACTGTATTGCGTATGTTGACACACGCGAGAGGACAAACAACCAACGCTTCAGTTTCCTCCTGTCCTCTGTGCTTCTAACAACGCCAGGGGAGCAATGCAGCAGTGACTTCGCTATAGAGTAGAAACTCACTGTAAGCACGAAAATAATTACAGCCTCAGCTCTTTCTCCCCCTCAGTAATTCACTCTGAAAGGCAACTATGCTGCCTCCCCATTACAATTCATTTAAACTGAGCCACCACAGACAGATAAGGCCATAATTGAAGatgaaacaaaaagcagatCCAGTTCAGCGAGATATTTTCCTTGAGATCAGaatcttgttttgttcaatCGGGGCCACAGGTCAAGGAAAGCGGCCCTGTTGAGATTCCGGTCGTGCGCCTGCACTGGTAACAGCTATTAATGTCTCCGTTTGGACAGAAATCGAACCGCGGCGATCCAGCAATTATACGGGAGCTGAAACTTGACGCTCTGTCATAACCACTCTGCAATTAGCAAGAAATTAACTGCGGCAATTAAACGGCAGCTGCATCGATGCATGAATGGAATTATTTCGGCCAGCTGAACTGTTTCGATAATGTTTACAGCCATGATGAAGTGATCTCTCTGGACACAGGAAAACTACATCCTGTCAGAAAAGCCTTCAGATCTCGCCCAAGACGGTGCGTTTCTGTCTGGAAAGCACTGGCAGGGATTCTGACATGAATTGGCTCCCAAGAACCAAACATCAAATGGCAAAAGCAGTCGAGGGCCCTTATCGATTCTGCACGACGCGCAGGCTGTGTTTTCGGTATGAGGGCCGTGCTGAACTCCGACTGGCCCCTCTACGTTTCCTACGAGGCTCGTTGAAAGAGAAGAAGTTCACCTGGGTCCTTCAGGTGCTCAGGTTTAATCTGCACAAAGGCGCTGTGGCCtgtggactggactggactcccGGTCCGCTGTGTAACATCTCACCACAGAGATCCTTAACTCACTCCCCCTCTCCTACAGTAAACTGGACTAAATGTGCAAGGTTTCCCAGTCTCGAGTCACTGAGGATTCGTCCGTTTTGATTAATTAGTTTCCTACAAAAGCCTGCCGGGCCATGATGGGCCGGACGTGGAGAGGGTTTCttttgagtgtttttgtgtggtttatAGCTCTCTGTACCGTCAGCAGATGCCAGATCGATCCCCTCTCACTGCTTTCCATGTCTACCCAAGGAAGAGAGAGCCCATCTACGCCAACCTACTGTTACTGCTGATACCAATGATAAgtcaaatatattgtttttctttttcaagccTCACATCCCAGAGAGCTGGTTGATCAAATTGAACTGTTAGTTTCATGTCAGATGCTGCCCGTTTGTGATGTCACAGAGTGCGCACCTTCAACAGCAGACGTCATCTATCATCCTTTAACAAACTTTTCAAGACCTACCCCAAGGTTATAATCTCTTTTCAACTTGTAATACTTTTCATATCGCACGCAGAGTGGAGAAGAGCTGATCTAAAGGCATTGTGTGTTGGAAACAGACTCTCAGATTTGACAAATGTCCCCCTCCCCCCGGCGCCACCTCCACTGTCACTCTCTCCCCCGGCTCGGCCTCCGGGCAGGCTCTCTCACCCCGGAGACGATGCGGTTTTGCTGCTTCTGCTGCATAATATTTTAACACAGATCCTGAGATCATTCGGAAGTACAGCACAGATCTAACGACCCGTGGGAAATGGTGGTTTATGCATGAGCTTGTTTATTTGGAATAAGGTTTACCGCCCCTGTCCCCTCTAAATCCATCCTAGCTCTGAATGAACAGGACCTCACGACCACAGTGCAGGGTTTAGTGAAACCACAAGGATTCAGACTCCCTCCCTCAAAGATGTGACCGAGAGCGGGTGTGTCTGTAATGTCTGAGAGGGTTCTACAAGCTTTGAAGTCTAAATTAGCATTTGTTtgccaattaaaacaacatgtttcCATATGTATTCGATATCTAATCTCGTGTCAACTtgggaaaacaatatatatatagttagttatttattttcctacagAGACCGCGGGGATTTACTTTGAGTGAGTATGCAAATGcactttcttattttgtgttttgaatttttCTCCGTTTACATGTCTGCACTGATTGGTTGGACTTGATGTTTGTGGGCTTTAATTGAGCTCTGAAAAGCACAGCACtgctttggtttgttcttgtttgtctTAAATTGGAAGATTTACTTGACTTTTAGAAACACAATGGAAGcagaatatgaaaatgaaaggtGACTGTTCTCCTTACGGATACAGACACTGGTGACATGATTGTGTGCAGGTTGACCCTGCGTggcttgtgttgtgtgtggctgCTGTTGGGTGACAGAGATGTTAGTGGAAGCATTATTTGTAGCAGCAgaaggagacacacacactgcttttcCGGATATCATTCTCGGTTGGCAGAAGCTACTTTTAATGGAGTAATTTCAGCTCCGTTTCCCTGTTCCACGGTTGTTCATATCTCGGCATCTCGTGTTGATGTTGAAAGCGCCCTGCCGTGCGATCGGAGTATTCCAGTCAGTCGAGCCGCTCCACACTCCGAGTTCACACCCGGACGGACCTGTGAGCAGCTCAGCTGAGGAAGCAGAGTAGGATCACAGTTTTGAATTGACGCAGACTCGGAatcccactgctgacaccaaTGTAAGCATCTGGGGGGTTCCGGCCACAGCGAGACTCGAACCCCCCAGTGACCTCACTGCAACACTGAAAGGCCCAGGCCCCTTATCGAGGCttcagaataataacaatatgaaaaagagaagaatTACCAGGGGAGTCAAAGTCTACAAAGATATTTCACTGTGATCGTGGAGTTAAACAAGCAATTAACATATTGTCCCAAGATCGTGTTAAACGAGCAATCAACAGCTGCGTTAACAGCATTACAGTTCATTAACGGACTCTGCTCGCTGGGCACCATTTTTCTACTATCATACACTGCAGGGAAATTCAGGGCTGTGGTAAAAGGTAGTCTGTTAGTTGTACTTCATATTTGATGTCTTAATGTTTTAGCGCCTCCCTATTCAATACTGTATTAAATGATTCGGTTAATACTACACACTAAGTGCTTCTCTCTATTGATCTTACggcatctttaaaaacaaaatattgacattttgaCTCTCGCCGCATCAATTTTCACCCAAAAACCACTGGGATGTCACCGGTAGAGCTCTTTAAATATCCTCTATAAAGTCCTTCCGTTTAATTTCATTGGCAGATACTGTGATGGAACGCAAGCTGTAAAATCGGCAGGTTTGCCTTAGATCTTTTGAACGGGTGGCACTAGAGCTGCCTGAGAGAAAAGACTCATTGCTACTTGAAAAAACTTGAAGATGAACAGAATCATGATGCTTAATTGAGCGGATTTAATGAAAAGGGTTCTGTCCTTATACTTCATGATTCCCGGGCAGGTGAATGTTTCAGTGAGCTCTAGGCCTTTGTTTAGTTTAACATGCACAGACTTATTCACATGTTCATGTTATTAGTGTATTGTGTTCCAGTCTCTTTGCCCATACTGTCACTTGTATAACTCCTTGTATTATAAAGATGAATCAACACAAACTCAGCACTTTGTTACTTGAATCCGCACAACAGcccaaattgaaataaaatgagtATAAATCTGAGGATAGCCACACCAAGAACCATCCGCGCGGGGTCTCCTGCGCTCCTGATGTTCATCGCGACTTCTCTCGGCCCCAGTGTGCGACAGGGATGTCGGTTTGAAGATCCGGCCTTCGTTTCGAGTGTTAGTTTGTATTGTGCAGATGTAGGAGATGAAAATAAGGATGCGGTTGCAGACAAATGAGTTCACCTGCTCTTGTTAATGCTGCGCTCGGAGGCTGAACCTTCATGTCGTTTGTTTCATGATTTCTTCATCCATCAACTCGAAATGAAATCTTTGTGACGCGAGCGTTTTGGTGTTAACGACACAGAATGCTtcttgtaaatatgtatgtagaCAAACAACACATCGCTCTGCAACCTGCCTCACCCCCCCTCACCTGCGGTTTGCCTTCAGAGACACCAGCCTATTCTTTTACTTCATTCAGCTTCTTCAAAAATGGAGGACAAATAAGTGACGCTGAAGGAGTCGGGCATTCGGGGCAAACATGCCAACTTTGTGTTAAAGTGTGTGAACATGAACAGATGAGGGACCCGACCGAATCGACACTGAGCTGACCGTGAATTGGACAATGACAAAACTGTCCCCCGATCACGTGTGTCGGTAGAACGTCGTCTCTAACACTGAGATGACCCACGCTGGGGcccaggtttgtagtttgcgaTTGGTGGGAAGGTCAGTTTTGATTCGGTCTCGGCcaagaactatatatatattcatagaaACATgcacatggagagagagagagacgagttGTCTGTAAGTGTTAAATCAGGTATCTATTCTGGTGTGTTGGTGGGACGGTGGAGGCACGGTGCGCGGCTCTGCTAGCACCAGTGTAGGATTTACAGAGTAGTACAGTACTTGTACATTTGAACTTTACAGTCCTGTCTTTGTGTAATTAggtgtgtacattttatataaaaactatTCAATAAAGAGCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117195 lncRNA upstream 187815 27284722 ~ 27285066 (+) True G93938
TU117143 lncRNA upstream 475530 26995787 ~ 26997351 (+) False AMCG00017886
TU117138 lncRNA upstream 484846 26983969 ~ 26988035 (+) True G93891
TU117124 lncRNA upstream 556400 26915913 ~ 26916481 (+) True G93878
TU117087 lncRNA upstream 973711 26498712 ~ 26499170 (+) True G93842
TU117246 lncRNA downstream 1345 27698724 ~ 27700728 (+) True G93986
TU117309 lncRNA downstream 143674 27841053 ~ 27841261 (+) True G94039
TU117331 lncRNA downstream 400354 28097733 ~ 28099214 (+) True G94055
TU117333 lncRNA downstream 403354 28100733 ~ 28102094 (+) True G94057
TU117345 lncRNA downstream 745387 28442766 ~ 28444925 (+) True G94069
AMCG00017892 mRNA upstream 57718 27411360 ~ 27415163 (+) True AMCG00017892
AMCG00017890 mRNA upstream 112149 27351688 ~ 27360732 (+) True AMCG00017890
AMCG00017889 mRNA upstream 194530 27269235 ~ 27278351 (+) True AMCG00017889
AMCG00017888 mRNA upstream 471087 27000562 ~ 27001794 (+) True AMCG00017888
AMCG00017886 mRNA upstream 475429 26992891 ~ 26997452 (+) True AMCG00017886
AMCG00017897 mRNA downstream 47534 27744913 ~ 27768328 (+) True AMCG00017897
AMCG00017901 mRNA downstream 76474 27773853 ~ 27787082 (+) True AMCG00017901
AMCG00017900 mRNA downstream 113843 27811222 ~ 27837126 (+) True AMCG00017900
AMCG00017904 mRNA downstream 210365 27907744 ~ 27909564 (+) True AMCG00017904
AMCG00017905 mRNA downstream 219047 27916426 ~ 27919140 (+) True AMCG00017905
TU116638 other upstream 2757260 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 6650934 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 6657335 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 7944588 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 8049202 19421310 ~ 19423679 (+) False AMCG00017710
TU117380 other downstream 945351 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 1736033 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 4710050 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 4763919 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 4810311 32507690 ~ 32601449 (+) True G94857

Expression Profile