RNA id: AMCG00017899



Basic Information


Item Value
RNA id AMCG00017899
length 4924
RNA type mRNA
GC content 0.57
exon number 25
gene id AMCG00017899
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27698901 ~ 27723731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCGCGCCTGCGCAGTGGCCACGGCGAGCCGGCGAGTTTGACGTGGCACTTCGCCGCACGGAGACTCATAGAAACGCGCCCGGACTGAGATCAGCAGATTGCCAGAAGCCGACCGACTGGAATGAGAAGACACTGAAGACAGAGTCAGAAATGAGTCACCAGGGCTATGTTGCAACACCCCCGTACTCCCAGGCCCAGCCAGGCATCGGAGGATACCCGTCCGGCTTCGGGTCATCGGCTTCCCAGCCCCTCTACGGACACTATGGCGGCCCGGCACAGTCCTTCCCTCCACCACAGCCAGGGGGGCTCAAACCAGCTGGACCTCCATCTTCAGGGATGCCTCCCCCAGGACCCAACCAGTACAGCCCCAATAACCTGCAGAACGGAGCGCACACCCAAAGatTTCCTCCTCCAGTGGTTTCTGCTCCTTCCTCTTCTTCCCCGTTCGGACAGCCTCCCCAGCCCCCCTATCAGAACCCAGGCGCCGCGGCCCCCACGTCACAGCTGACGCACCAGATGAGCGCCATGCAGATTGGCGGATATGgCCCGGGCTCCATGCAGGCCCCTCCCGGATCTTCTGCCCCGCAGGGTTTCCAGCCCGGCCCCCCGCACGCCATGTCCCGGACCTCCATGCCACTCGGCCCTCAGTCCCCCCAGATGGGGCCACCCTCCTTACCGGCCGGAGCCCTTCCGATGGGCGGCATGTCCGGAGCCCCTCCCATGGGCGGCATGTCTTTCTCCGGACCACCTCCTCCCTCAGGAAGTGTGGGATTCCAGCCACCAGCAGGACCACCAGGTCCCCACGGGTTCCCACCGCAACAAGAGTTACTCGATGTCAGTGGCAGTCTGGAGCACATGACACAGGTCATCGAGGACGATAAATCCAAAAGGGAAGGACAGCTCTACATCACAAACCTCAAGGGACAGGTGCCACCGCTGGTGACCACCAACTTCATGGTTCAGGATCAAGggaACGCCAGCCCTCGCTTCATGCGCTGCACAACCTACTCGTTCCCCACCACGTCGGAGCTGGCCAAGCAGTGTCAGGTCCCTCTGGCCGCCGTCATAAAGCCACTGGCCACCATCCCGAGGAATGAGGGCCAGCTGCACCTGGTCAACCACGGGGAGACCGGACCCCTCCGCTGCAACCGCTGCAAGGCCTACATGTGTCCCTTCATGCAGTTCATCGACGGTGGCCGGCGCTACCAGTGCAGCTTCTGCAGCTGTGTCAACGAAGGGTGTCTGGAGTTAGACCGGAAGATTTTGGGTGGCAGGTGTTGTGGCCTGAATGAAGTGCCGCCATTTTACTTCCAACACCTGGACCACGTCGGCAGGAGGGTGGACTTCTACGAGCGGCCGGAGCTGTCGCTGGGGTCGTACGAGTTCGTCGCCACGCTGGACTACTGCAAGAACAACAAGACGCCGAATCCTCCggccttcatcttcatgattgACGTGTCGTACGGCAACGTGAAGAGTGGGGTGGTGAGGCTGGTGTGCGAGGAGCTGCGCACGCTGCTGGATGCGCTTCCCAGGGCAGAGAACGCAGAGAGGTCGGCGATCCGGGTAGGCTTCGTCACCTACCACAAAATCCTGCACTTCTACAACGTGAAGAGCAGCCTGGCGCAGCCGCAGATGATGGTGGTGTCGGACGTGACAGAGATGTTCGTCCCGCTGCTGGACGGCTTCCTCGTCGACTTCCAGGAGTCCAGATCGGTCATCCACAACCTGTTGGACCAGATCCCAGAAATGTTTGCCGAAACCAACGAAAGCGAGACGGTCTTCGCCCCCGTCATCCAGGCCGGCATGGAAGCTCTGAAGGCTGCCGAATGCAGCGGGAAGCTCTTCATCTTCCACTCCTCCCTGCCCACCGCCGAAGCGCCCGGCAAGCTGAAGAACCGGGACGACAGGAAGCTGCTGAACACGGAGAAGGAGAAGACGCTGTTCCAGCCTCAGAAAGGTGTTTATGAATCTCTGGCCAAGGAGTGCGTGTCCAACAGCTGCTGTGTGgacctcttcctcttccccaaCCAGTTTGTGGATGTGGCCACGATGGGAGACATCCCCCTGCACACCGGGGGGACGCTGTACAAATACAGCAACTTCCAGATCCAGGCGGACGGGGACCATTTCCTGAACGACCTCCGCAATGACGTGCAGAAGCCCATCGGATTCGACGCCATCATGCGTGTCCGGACGAGCACAGGCTTCAGGGCCACAGACTTCTTCGGTGCCGTTTACATGAGCAACACGACGGACGTGGAGATGGCTGCGGTGGACTGCGACAAGGCCGTGACAGTGGAGTTCAAGCACGACGACACGCTCAGCGAAGACAACGGGGCCTTGATACAGtgtgcgTTACTCTACACCACCGTGGGGGGGGAGCGGCGCCTGCGCGTCCACAACCTGAGCCTGGGCTGCAGCTCCCAGCTGGCCGACTTGTACAAGAGCTGCGAGACGGACGCCCTCGTCAACTTCTTCGCCAAATCAGCGTACCGGGCCATCCTGAACCAGCCGCTGAAGACGGTGCGAGACATCCTGGTCAGCCAGACCGCCCACATGCTGGCCTGTTACAGGAAATGTTGCGCCAGCCCATCGGCAGCCAGTCAGGTCCCGCAGTGGGAGGTGGAGTGTAGGAGTCGGGGTAGTTCAGCTCAGAGCAGCGTGGATTCCTGGATCCTCAGAGAGTTATTTTACCTGAAGCTCATCCTGCCGGACGCCATGAAGGTCTTCCCCGTCTACATGAACGCCCTGATGAAGAGCTGCGCGCTGGTGGGCAGCCCCGACGTCCCCATCGATGACCGGGCCTTCCACAGGCAGCTGGTGCTGTCCATGGACGTGGCCGACTCCCAGGAGCGGCTGAACGACACCGGCGCCTTCCTGCTGGAGAACGGGCGCCTGCTGTTCCTGTGGCTCGGCCAGGCCTGCCCCCCCGACTTCATCCAGGGCGTCTTCAACGTGCCCTCCTTCGCCCACATCAGCACGGAGGCGAATTCGCTACCAGAGCTGGACAACGCTCACTCGAAGAAGCTGCGCTCGGTCATCGACCACATCACCCAGCAGAGGGCGCACTCACTGAAGctcGTCATCGTCAAGCAGAAGGAGAAACTGGACATGGTCTTCCGGCAGTTCCTGGTCGAAGACAAGAGCCTCCACGGCGGAGCGTCCTACATGGACTTCCTGTGCTACGTCCACCGCGAGATCAGACAACTGCTCACCTAACCTCGCCTGAGCGCACAGACTCTGACCTCCAGCTCAGACCCGcgcttctctcctcctctcctctcctctcctctcctctcctctcccccggCTTCGTCCCGCACGGCGGACCTGCTCCGCTGAGGATCCGGTGCCACGTTTCTACCCCACGCCCAGGATCTCGACTCCGATGTGCCTTGGTCGCCACCAGCTCGTCTCTCATTCGTGTCTTTATTTGAAGTGGATTATTTTACAGTAGCACCGATGTCAGCCCTAGGACTTAATCCTAGTGTCAACCGAATGTGCCGCTTATCCCATAACCACAGCTCTCAACAGCGACCTTTTTATTGGTATTGTTGTTATGCGAGGCCGATTTCTGAATGATtaagctgtgtgtctgtctgctgaAGGGAAGAGACACCCAATCCTCCAGTCCGTGCATTTCCAGGTCACTTTATTAACGGTCTTGGTATTTCAATTTCTCTTATTATACAATCCCTCAAACTCCGCCCATTTCAGCTTTTCTTCCCCCCCTaaacttgtatttgtttgtttgtcttgttgtGGTTCGTGGCTGCCGGTGTTTGCTCTAGTATATTTGTGTCACATTGTGCCGTTTCTTTGCTCGTTTTGGCTCGGGTCGGTGGCAGGGGATCCGGATCAGCCTTCCCCTCATCTGTGTGCGGGACAGGGCTGCCCGTCCGTCTCCTGGCTCCTGTTCCCACCCGGCCCGGCGCCCCGTAGATGTGGTTAAACTCGTCAGCCGCACGCTTCACTGGTCCTCTGCGCCGGTGGCTCCTCGGATCAGAAGGGTGTCTTTGGCCACAGTGTAGAAGAACTCGAATCTGTGTTTAATGTCTTGATTGTGGTTGGGTCGGTGTACTGACCCCTGCAGCTGGAATGGAAGCTGGCCGAGAAGCCCGGTCTGCGGATGTTATCTCCCGTTTAAAGCGACCCCAGGCAGCCACTGACCCCTCCCACACATTCCCTATTGtggcattttttcattttatcagttttgtgcgtttgtgtttctttactttcaaaacaaaactaaactaaaacaagcAACGACATGCACacgtatgtaaaaaaaaaaagcaagcagaACGTCTCTCTCGTTAACAGTTTAGTTTCTACTTATTTCTGTGTTAGTTTCTTTCGTTTTAATGGTTTCTGTTAATTGATTTGCGTTGTGTATACTtgacattataaaatgtaatcattccTTAGCGTAGTGGAAGAGTAATGGCCCGTCAGACTCCACGTGTCCGAGCGGCTTCATGTGAACACGTCCTACTGTGGGTGGAGTCCCGTAAGGGATGCCGTGTCATCAGACGAGCCATGTTTGTGCTGAAGAGCAGAATTTAAAAAGAGCTTCTGCTTGTATTCGTCTTCTTCTCCACACTGCCTTACTGAGGTACTTaagtgcatataaatatattttattaagggCGTGATactaaattcatattaataataacaatgttttgtaTGCAACTCAGGTAATACTTGTGTATAACCTATCTtcagtaaaaacacacacttgctCTCCATGAACATGAGCGGCCCTTTTGTAACAAGCCGAGACTCTGGGACGCAGTGCTCTGTGCGGGGGTCTCTGCGTGGCGTCTCGCTTGGAGGGGCGTGTGTAAAGCACATTCCAATATGCAACCTTTATAATAAAGTTACGTTTGGATGAAATTCTGGACTCTCCAATAAAG

Function


GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0070278 extracellular matrix constituent secretion biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14007 SEC24; protein transport protein SEC24

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117088 lncRNA downstream 1199724 26498914 ~ 26499177 (-) True G93843
TU117058 lncRNA downstream 1345177 26353517 ~ 26353724 (-) True G93816
TU117044 lncRNA downstream 1440534 26258096 ~ 26258367 (-) True G93802
TU116973 lncRNA downstream 1750307 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 1751947 25945141 ~ 25946954 (-) False AMCG00017861
TU117271 lncRNA upstream 38955 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 55306 27779037 ~ 27784050 (-) True G94012
TU117305 lncRNA upstream 114520 27838251 ~ 27839790 (-) False AMCG00017902
TU117306 lncRNA upstream 114520 27838251 ~ 27839790 (-) False AMCG00017902
TU117307 lncRNA upstream 114520 27838251 ~ 27839790 (-) True AMCG00017902
AMCG00017895 mRNA downstream 266325 27427479 ~ 27432576 (-) True AMCG00017895
AMCG00017893 mRNA downstream 272669 27415574 ~ 27426232 (-) True AMCG00017893
AMCG00017894 mRNA downstream 290344 27400504 ~ 27408557 (-) True AMCG00017894
AMCG00017896 mRNA downstream 303241 27368219 ~ 27395660 (-) True AMCG00017896
AMCG00017891 mRNA downstream 388756 27290553 ~ 27310145 (-) True AMCG00017891
AMCG00017902 mRNA upstream 114523 27838254 ~ 27839681 (-) False AMCG00017902
AMCG00017903 mRNA upstream 118481 27842212 ~ 27844771 (-) True AMCG00017903
AMCG00017906 mRNA upstream 375174 28098905 ~ 28120641 (-) False AMCG00017906
AMCG00017907 mRNA upstream 710301 28434032 ~ 28443288 (-) True AMCG00017907
AMCG00017908 mRNA upstream 733965 28457696 ~ 28457938 (-) True AMCG00017908
TU117034 other downstream 1588827 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 1591096 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 1683409 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 1683409 26012661 ~ 26015492 (-) False AMCG00017866
TU116217 other downstream 4376947 23318126 ~ 23321954 (-) False AMCG00017780
TU117337 other upstream 379568 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 1150430 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 1545504 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 2904257 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 4539045 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066952 True 4532 mRNA 0.49 23 NC_007118.7 69905307 ~ 69951096 (+)